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Information on SUBCLASS 2.1.7
Subclass Accession number: 4507
Subclass: 2.1.7 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 10.7 +/- 13.4
Average RMSD (Å) : 0.692 +/- 0.225

Consensus geometry
d (Å): 11 delta (°): 0-45 theta (°): 45-90 rho (°): 270-315
Consensus Sequence: XXhphX
(φψ)-conformation: aappaa
Pattern: x[DEKQRS]xx[degkqrs]x[AFIL][dnprst][fgilmpv]xx[afilv]x[dekrs]
Conservation:-0.8741.932-0.725-0.860-0.637-0.4882.3360.615-0.558-0.451-0.4300.137-0.1400.144
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ezv_A_1811ezv   A181194LESLENLVVADLESHHHHTT--HHHHHHaaaaaaxbaaaaaa
1fiq_B_3401fiq   B340353KQVKSVASLGGNIIHHHHTT-BHHHHHHaaaaaaxxaaaaaa
1fmk_*_3521fmk   -352365GETGKYLRLPQLVDHHHHTT--HHHHHHeaaaaaxbaaaaaa
1h3f_A_1291h3f   A129142SEWLEGLTFKEVVRHHHHTT--HHHHHHaaaaaaxxaaaaaa
1h5z_A_1551h5z   A155168KKFRDQLDGRFAKLHHHHTT--HHHHHHaaaaaabbaaaaaa
1jil_A_1251jil   A125138RDWLGQISLISFLRHHHHTT--HHHHHHaaaaaaxxaaaaaa
1k47_A_2181k47   A218231QQIKQNINQNFLTSHHHHTT--HHHHHHaaaaaaxbaaaaaa
1k9x_A_811k9x   A94107IRIARAFPPEFIREHHHHTSS-HHHHHHaaaaaabwaaaaaa
1kcm_A_2331kcm   A233246LDKWVDLTMDDIRRHHHHTT--HHHHHHaaaaaaxbaaaaaa
1oiz_A_1651oiz   A165178FSHAFQITPSVAKKHHHHTT--HHHHHHaaaaaaxxaaaaaa
1oxj_A_6221oxj   A622635YEEMLLITEDFLQSHHHHTT--HHHHHHaaaaaaxbaaaaaa
1qwg_A_1391qwg   A139152PDKDKQLTIDDRIKHHHHTT--HHHHHHaaaaaaxxaaaaaa
2ts1_*_1242ts1   -124137YDWIGPLDVITFLRHHHHTT--HHHHHHaaaaaaxxaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fiq_B_3401fiq   B     FADFLAVIN-ADENINE DINUCLEOTIDE V - 342
1fiq_B_3401fiq   B     FADFLAVIN-ADENINE DINUCLEOTIDE V - 345
1fiq_B_3401fiq   B     FADFLAVIN-ADENINE DINUCLEOTIDE A - 346
1fiq_B_3401fiq   B     FADFLAVIN-ADENINE DINUCLEOTIDE S - 347
1fiq_B_3401fiq   B     FADFLAVIN-ADENINE DINUCLEOTIDE L - 348
1fiq_B_3401fiq   B     FADFLAVIN-ADENINE DINUCLEOTIDE G - 349
1fiq_B_3401fiq   B     FADFLAVIN-ADENINE DINUCLEOTIDE G - 350
1fiq_B_3401fiq   B     FADFLAVIN-ADENINE DINUCLEOTIDE N - 351
1fiq_B_3401fiq   B     FADFLAVIN-ADENINE DINUCLEOTIDE I - 353
1fiq_B_3401fiq   B     FADFLAVIN-ADENINE DINUCLEOTIDE T - 354
1oiz_A_1651oiz   A     TRTFRAGMENT OF TRITON X-100 F - 165
1oiz_A_1651oiz   A     TRTFRAGMENT OF TRITON X-100 H - 167
1oiz_A_1651oiz   A     TRTFRAGMENT OF TRITON X-100 A - 168
1oiz_A_1651oiz   A     TRTFRAGMENT OF TRITON X-100 F - 169
1oiz_A_1651oiz   A     TRTFRAGMENT OF TRITON X-100 I - 171
1oiz_A_1651oiz   A     TRTFRAGMENT OF TRITON X-100 V - 175
1oiz_A_1651oiz   A     TRTFRAGMENT OF TRITON X-100 A - 176
1oiz_A_1651oiz   A     TRTFRAGMENT OF TRITON X-100 I - 179
1oiz_A_1651oiz   A     TRTFRAGMENT OF TRITON X-100 V - 182
1oiz_A_1651oiz   A     TRTFRAGMENT OF TRITON X-100 L - 183
1oiz_A_1651oiz   A     TRTFRAGMENT OF TRITON X-100 T - 184
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1oiz_A_1651oiz   A AC2TRT BINDING SITE FOR CHAIN AF - 165
1oiz_A_1651oiz   A AC2TRT BINDING SITE FOR CHAIN AA - 168
1oiz_A_1651oiz   A AC6TRT BINDING SITE FOR CHAIN AI - 171

Clusters included in this Subclass
CLUSTER: HH.3.78
CLUSTER: HH.4.72
CLUSTER: HH.5.61