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Information on SUBCLASS 4.6.1
Subclass Accession number: 4789
Subclass: 4.6.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 10.9 +/- 16.1
Average RMSD (Å) : 1.100 +/- 0.204

Consensus geometry
d (Å): 15 delta (°): 0-45 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: pXXXhXXX
(φψ)-conformation: aappbpaa
Pattern: xx[adknqrst][adknqst]x[EKNPT][ailmpvy][ADPST]x[AEGNRST]xx
Conservation:-0.253-0.277-0.195-0.281-0.9871.905-0.6281.825-0.5060.705-1.288-0.019
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1akh_B_1731akh   B186197KEKTITIAPELAHHHH----HHHHaaaaxbxpaaaa
1aor_A_5451aor   A545556PARDDTLPKRFLHHHHS---HHHHaaaaxbbxaaaa
1gyc_A_4711gyc   A474485VKAANPVPKAWSHHHH----HHHHaaaabwbxaaaa
1hfu_A_4701hfu   A473484TVDANNPPVEWAHHHH----HHHHaaaabbxxaaaa
1i4m_A_1721i4m   A186197QHTVTTTTKGENHHHH----HHHHaaaapxbxaaaa
1iw0_A_1691iw0   A179190KLNNLELSDEQRHHHH----HHHHaaaaxxbxaaaa
1j02_A_1751j02   A185196RMNTLEMTPEVKHHTTS---HHHHaaaaxxbbaaaa
1j7n_A_3731j7n   A380391KLDIQPYDINQRHHHTS-B-HHHHaaaaxxxbaaaa
1kya_A_4711kya   A474485VASANPVPQAWSHHHHS---HHHHaaaabpbxaaaa
1n45_A_1751n45   A185196RMNSLEMTPAVRHHHH----HHHHaaaaxxbxaaaa
1n8f_A_191n8f   A2233LLQKFPATENAAHHHHS---HHHHaaaabxxxaaaa
1of8_A_341of8   A3748LQVQIPATPTSLHHHHS---HHHHaaaabxxxaaaa
1s7j_A_1531s7j   A155166TVAKITPDFSALHHHH----HHHHaaaapbxxaaaa
2trc_P_742trc   P7990LIHQDKEDEGCLHHHH----HHHHaaaaxbxxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1i4m_A_1721i4m   A     CDCADMIUM ION N - 173
1i4m_A_1721i4m   A     CDCADMIUM ION H - 177
1i4m_A_1721i4m   A     CDCADMIUM ION N - 181
1iw0_A_1691iw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 173
1iw0_A_1691iw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 177
1iw0_A_1691iw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 200
1iw0_A_1691iw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 201
1iw0_A_1691iw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 204
1iw0_A_1691iw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 205
1iw0_A_1691iw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 208
1j02_A_1751j02   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 179
1j02_A_1751j02   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 183
1j02_A_1751j02   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 206
1j02_A_1751j02   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 207
1j02_A_1751j02   A     NMONITROGEN MONOXIDE L - 208
1j02_A_1751j02   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 210
1j02_A_1751j02   A     NMONITROGEN MONOXIDE I - 211
1j02_A_1751j02   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 214
2trc_P_742trc   P     MSESELENOMETHIONINE I - 74
2trc_P_742trc   P     MSESELENOMETHIONINE E - 76
2trc_P_742trc   P     MSESELENOMETHIONINE Y - 77
2trc_P_742trc   P     MSESELENOMETHIONINE I - 80
2trc_P_742trc   P     MSESELENOMETHIONINE Y - 93
2trc_P_742trc   P     MSESELENOMETHIONINE R - 94
2trc_P_742trc   P     MSESELENOMETHIONINE R - 95
2trc_P_742trc   P     MSESELENOMETHIONINE Q - 96

Clusters included in this Subclass
CLUSTER: HH.3.89
CLUSTER: HH.4.254
CLUSTER: HH.4.78
CLUSTER: HH.5.205
CLUSTER: HH.5.353
CLUSTER: HH.5.98