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Information on SUBCLASS 5.4.1
Subclass Accession number: 4884
Subclass: 5.4.1 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 21

Average sequence ID (%) : 17.4 +/- 20.0
Average RMSD (Å) : 0.738 +/- 0.231

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XXcXXhXXX
(φψ)-conformation: aalppppaa
Pattern: x[acfiklmt][ilmpy]xx[gkns][adegkqs]x[ILMPTV][DENPST][adekqs][adens]x[afilmtv]
Conservation:-0.698-1.000-0.171-1.103-0.3832.516-0.131-1.0350.8170.8440.7190.483-0.749-0.107
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ak2_*_601ak2   -6780ATMDAGKLVSDEMVHHHHTT----HHHHaaaaavxxxxaaaa
1aky_*_481aky   -5568KIMDQGGLVSDDIMHHHHTT----HHHHaaaaavxbxpaaaa
1aw9_*_1201aw9   -120133VRPLLGGAPDAAVVHHHHTT----HHHHaaaaavbxpxaaaa
1brw_A_31brw   A821AKKRDGKALTKEEIHHHHTT----HHHHaaaaavxxxxaaaa
1dar_*_2251dar   -229242LKYLEGEEPTEEELHHHHHT----HHHHaaaaavxxwxaaaa
1e4y_A_441e4y   A5164DIMDAGKLVTDELVHHHHTT----HHHHaaaaavxxxpaaaa
1gnw_A_1231gnw   A123136FKSIYGLTTDEAVVHHHHTT----HHHHaaaaavxxxxaaaa
1i5n_A_1001i5n   A103116DAYKNSEEPDAASFHHHHTT----HHHHaaaaalbxxxaaaa
1khd_A_141khd   A1831EKLFKSQSMTQEESHHHHTT----HHHHaaaaavbxxxaaaa
1knq_A_451knq   A4962EKMASGEPLNDDDRHHHHTT----HHHHaaaaavbxxbaaaa
1m1e_B_111m1e   B2538MLRKMGSNLTASEEHHHHTT----HHHHaaaaavxxbxaaaa
1ng4_A_3351ng4   A343356SDLIMNKEVNQDWLHHHHTT----HHHHaaaaavxxbpaaaa
1nm8_A_4961nm8   A505518QAIEDLVSTPDIFMHHHHTT----HHHHaaaaavbxpwaaaa
1o17_A_31o17   A821KKLINKSDLEINEAHHHHTT----HHHHaaaaalbxxxaaaa
1p3j_A_441p3j   A5164SYIDKGELVPDEVTHHHHHT----HHHHaaaaavxxxpaaaa
1qf9_A_521qf9   A5770TMIKNGEIVPSIVTHHHHTT----HHHHaaaaavxxxpaaaa
1s3g_A_441s3g   A5164SFMDQGALVPDEVTHHHHHT----HHHHaaaaavxxxpaaaa
1ukz_*_631ukz   -6881NCIKEGQIVPQEITHHHHTT----HHHHaaaaavxxxpaaaa
1uou_A_361uou   A4154RMKRDGGRLSEADIHHHHTT----HHHHaaaaavxxxxaaaa
1zin_*_441zin   -5164QYMDRGDLVPDEVTHHHHHT----HHHHaaaaavxxxwaaaa
2ak3_A_492ak3   A5669TFIDQGKLIPDDVMHHHHTT----HHHHaaaaalbxxwaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE A - 53
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE I - 56
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE M - 57
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE D - 58
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 60
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 61
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE L - 62
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE V - 63
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE S - 64
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE D - 65
1aky_*_481aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE M - 68
1aw9_*_1201aw9   *     CDCADMIUM ION E - 138
1aw9_*_1201aw9   *     CDCADMIUM ION K - 142
1aw9_*_1201aw9   *     CDCADMIUM ION H - 150
1aw9_*_1201aw9   *     CDCADMIUM ION L - 151
1aw9_*_1201aw9   *     CDCADMIUM ION A - 152
1aw9_*_1201aw9   *     CDCADMIUM ION R - 153
1e4y_A_441e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE A - 49
1e4y_A_441e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE I - 52
1e4y_A_441e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE M - 53
1e4y_A_441e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE G - 56
1e4y_A_441e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE K - 57
1e4y_A_441e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE L - 58
1e4y_A_441e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE V - 59
1e4y_A_441e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE T - 60
1e4y_A_441e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE D - 61
1e4y_A_441e4y   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE V - 64
1gnw_A_1231gnw   A     GTXS-HEXYLGLUTATHIONE F - 123
1gnw_A_1231gnw   A     GTXS-HEXYLGLUTATHIONE I - 126
1gnw_A_1231gnw   A     GTXS-HEXYLGLUTATHIONE Y - 127
1gnw_A_1231gnw   A     GTXS-HEXYLGLUTATHIONE K - 142
1i5n_A_1001i5n   A     MSESELENOMETHIONINE E - 100
1i5n_A_1001i5n   A     MSESELENOMETHIONINE Q - 101
1i5n_A_1001i5n   A     MSESELENOMETHIONINE L - 102
1i5n_A_1001i5n   A     MSESELENOMETHIONINE D - 103
1i5n_A_1001i5n   A     MSESELENOMETHIONINE L - 123
1i5n_A_1001i5n   A     MSESELENOMETHIONINE L - 126
1i5n_A_1001i5n   A     MSESELENOMETHIONINE A - 127
1i5n_A_1001i5n   A     MSESELENOMETHIONINE A - 130
1p3j_A_441p3j   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE Y - 52
1p3j_A_441p3j   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE I - 53
1p3j_A_441p3j   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE D - 54
1p3j_A_441p3j   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE E - 57
1p3j_A_441p3j   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE P - 60
1p3j_A_441p3j   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE T - 64
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE I - 55
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE M - 58
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE I - 59
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE K - 60
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE N - 61
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE G - 62
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE E - 63
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE I - 64
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE V - 65
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE P - 66
1qf9_A_521qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE T - 70
1s3g_A_441s3g   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE F - 52
1s3g_A_441s3g   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE A - 57
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE I - 66
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE C - 69
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE I - 70
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE K - 71
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE E - 72
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE G - 73
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE Q - 74
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE I - 75
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE V - 76
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE P - 77
1ukz_*_631ukz   *     AMPADENOSINE MONOPHOSPHATE T - 81
1zin_*_441zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE D - 57
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE F - 57
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE I - 58
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE G - 61
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE K - 62
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE L - 63
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE I - 64
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE P - 65
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE D - 66
2ak3_A_492ak3   A     AMPADENOSINE MONOPHOSPHATE M - 69
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e4y_A_441e4y   A AC1AP5 BINDING SITE FOR CHAIN AK - 57
1e4y_A_441e4y   A AC1AP5 BINDING SITE FOR CHAIN AL - 58

Clusters included in this Subclass
CLUSTER: HH.5.12