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Information on SUBCLASS 1.1.3
Subclass Accession number: 5269
Subclass: 1.1.3 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 19.9 +/- 19.4
Average RMSD (Å) : 0.531 +/- 0.144

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: pXGhX
(φψ)-conformation: aagbb
Pattern: x[aeknqrt][ALV]x[dekqrty]x[DG][filvy][adegkqrt]x
Conservation:-0.582-0.4930.530-0.331-0.484-0.4922.5820.429-0.462-0.699
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1g8m_A_5471g8m   A550559DRAKRIGVQFHHHHTTTEEEaaaaaavxab
1g8s_A_1891g8s   A198207EILEAGGFKIHHHHHHTEEEaaaaaagbbx
1gpe_A_2981gpe   A300308LILEYSGIG.HHHHHTTEE.aaaaaavbe.
1h5r_A_381h5r   A4251STLMLAGIRDHHHHHTTEEEaaaaaavbab
1hnn_A_2361hnn   A241250EALVRSGYKVHHHHHTTEEEaaaaaavbxx
1iq0_A_1201iq0   A134143RILAYAGREVHHHHHTTEEEaaaaaagxxb
1j9j_A_2151j9j   A216225YKAVREGYVSHHHHHTTEEEaaaaaavbxx
1kll_A_821kll   A9099AELVDAGYEGHHHHHTT-EEaaaaaagxxx
1nh8_A_1601nh8   A160169RTLSQHDLVAHHHHHTTEEEaaaaaalbbx
1pkx_A_5461pkx   A549558DRAKRSGVAYHHHHTTTEEEaaaaaavxab
1tfr_*_401tfr   -5665KKAKTLGYTKHHHHHTTEEEaaaaaagxab
1vh8_A_741vh8   A8392RQVQEKGYKIHHHHHTTEEEaaaaaavbbx
1vjg_A_291vjg   A3645VNANKKGYDVHHHHHTTEEEaaaaaavxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1gpe_A_2981gpe   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 301
1h5r_A_381h5r   A     THMTHYMIDINE S - 42
1h5r_A_381h5r   A     THMTHYMIDINE L - 46
1h5r_A_381h5r   A     THMTHYMIDINE I - 55
1kll_A_821kll   A     MSESELENOMETHIONINE K - 88
1kll_A_821kll   A     MSESELENOMETHIONINE L - 92
1nh8_A_1601nh8   A     AMPADENOSINE MONOPHOSPHATE R - 160
1nh8_A_1601nh8   A     AMPADENOSINE MONOPHOSPHATE T - 161
1nh8_A_1601nh8   A     AMPADENOSINE MONOPHOSPHATE L - 162
1vh8_A_741vh8   A     MSESELENOMETHIONINE I - 99
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h5r_A_381h5r   A THMTHM BINDING SITE FOR CHAIN DL - 46

Clusters included in this Subclass
CLUSTER: HE.1.51
CLUSTER: HE.2.38
CLUSTER: HE.3.191