ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.2.11

Subclass Accession number: 5357
Subclass: 2.2.11

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 12

Average sequence ID (%) : 13.0 +/- 16.5
Average RMSD (Å) : 0.508 +/- 0.183

Consensus geometry

d (Å): 9

delta (°): 0-45

theta (°): 90-135

rho (°): 90-135

Consensus Sequence:	XpXXXh
(φψ)-conformation:	aapabb

Pattern:	x	[deqrsty]	x	[fklm]	[adekns]	[agknqrst]	x	[degnqt]	x	[ailvy]
Conservation:	-1.217	0.416	-0.365	1.197	0.385	-0.127	-1.193	0.256	-1.076	1.723

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1dqd_L_182	1dqd	L	182	191	KDEYERHNSY	HHHHTS--EE	aaaaaabaxb
1fue_A_39	1fue	A	39	48	KEQFNGFTKV	HHHHTT-SEE	aaaaaababb
1g3q_A_125	1g3q	A	128	137	MSAMLSGEEA	HHHHTT-SEE	aaaaaaxabb
1g8p_A_203	1g8p	A	203	212	PQLLDRFGLS	HHHHTT-SEE	aaaaaaxabb
1in4_A_165	1in4	A	165	174	SPLRSRFGII	HHHHTT-SEE	aaaaaaxabb
1jl3_A_69	1jl3	A	69	78	SDILNNADLV	HHHHTT-SEE	aaaaaaxabb
1k1e_A_129	1k1e	A	129	138	IYVKNAVDHV	HHHHTTSSEE	aaaaaaxabx
1mb4_A_59	1mb4	A	59	68	IESLKQLDAV	HHHHTT-SEE	aaaaaaxabb
1nwc_A_61	1nwc	A	61	70	IEELKKLDII	HHHHTT-SEE	aaaaaaxabb
1pbt_A_172	1pbt	A	172	181	FRALNTSLYV	HHHHTT-SEE	aaaaaaxabb
1rkd_*_175	1rkd	-	175	184	DELLALVDII	HHHHTT-SEE	aaaaaaxabb
1ual_A_96	1ual	A	99	108	VTELAQNQKL	HHHHTT-SEE	aaaaaaxabb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1fue_A_39	1fue	A	FMNFLAVIN MONONUCLEOTIDE	P - 53
1g3q_A_125	1g3q	A	ADPADENOSINE-5'-DIPHOSPHATE	V - 140
1pbt_A_172	1pbt	A	FMTFORMIC ACID	A - 174
1pbt_A_172	1pbt	A	FMTFORMIC ACID	T - 177
1pbt_A_172	1pbt	A	MSESELENOMETHIONINE	F - 183
1pbt_A_172	1pbt	A	MSESELENOMETHIONINE	L - 184
1pbt_A_172	1pbt	A	MSESELENOMETHIONINE	I - 185

Clusters included in this Subclass

CLUSTER: HE.4.61

CLUSTER: HE.5.70