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PDB code:

Information on SUBCLASS 3.2.2

Subclass Accession number: 5459 Subclass: 3.2.2 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 34 Average sequence ID (%) : 13.5 +/- 14.4 Average RMSD (Å) : 0.756 +/- 0.193 Consensus geometry d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1avq_A_75	1avq	A	90	101	TLFEFTSGVNVT.	HHHHHHH---EE.	aaaaaaavbxbb.
1cg2_A_330	1cg2	A	341	353	VAYYKEAGGTLGV	HHHHHHTT---EE	aaaaaaavbbbxb
1crl_*_136	1crl	-	139	151	ITKSIAMGKPIIH	HHHHHHTT---EE	aaaaaaavbxbxb
1cv8_*_67	1cv8	-	71	83	IYFGQTQGRSPQL	HHHHHHTT---EE	aaaaaaavbbxbx
1edq_A_331	1edq	A	347	359	DQLSVETGRKYEL	HHHHHHHT---EE	aaaaaaavxxbbb
1efv_A_114	1efv	A	121	133	PRVAAKLEVAPIS	HHHHHHHT---EE	aaaaaaavbxxbb
1elj_A_232	1elj	A	232	244	INDVKKAGINFGV	HHHHHHTT--EEE	aaaaaaavxxbbb
1gud_A_14	1gud	A	24	36	EDEAKTLGVSVDI	HHHHHHHT--EEE	aaaaaaavbbbbb
1j9b_A_14	1j9b	A	19	31	LEMIRNSGTEPTI	HHHHHHTT---EE	aaaaaaavbxxxb
1kw3_B_69	1kw3	B	76	88	ADKLRQAGVAFTR	HHHHHHHT---EE	aaaaaaavxxbbx
1l1y_A_624	1l1y	A	627	639	VYQAYLRGEAPVL	HHHHHHTT---EE	aaaaaaavbxxbb
1lkd_A_70	1lkd	A	77	89	ADKLKQAGIAVTT	HHHHHHTT---EE	aaaaaaavxxbbx
1llf_A_136	1llf	A	139	151	VTKSVLMGKPIIH	HHHHHHTT---EE	aaaaaaavbxbbx
1lng_A_31	1lng	A	35	47	EKALKKLGLEPKI	HHHHHHTT---EE	aaaaaaavxbwbx
1m1n_A_163	1m1n	A	168	180	KVKGAELSKTIVP	HHHHHHHT--EEE	aaaaaaalbxbbw
1nnf_A_10	1nnf	A	18	30	KAFEQETGIKVTL	HHHHHHS---EEE	aaaaaaavxxbbx
1oc2_A_201	1oc2	A	205	217	QITNILAGIKPKL	HHHHHHHT---EE	aaaaaaavbxpbb
1ols_B_230	1ols	B	239	251	SMAKEKLGVSCEV	HHHHHHH---EEE	aaaaaaavxxbxb
1pb7_A_66	1pb7	A	72	84	IKLARTMNFTYEV	HHHHHHHT--EEE	aaaaaaalbbbbb
1pxv_A_286	1pxv	A	290	302	IEYGKSQGRDIHY	HHHHHHTT---EE	aaaaaaavbxxbx
1qup_A_54	1qup	A	58	70	INTLRNCGKDAII	HHHHHHTT---EE	aaaaaaavbxxbp
1qyc_A_224	1qyc	A	229	241	ALWEKKIDKTLEK	HHHHHHTTS--EE	aaaaaaalbbxxb
1r0v_A_63	1r0v	A	70	82	YEDLRDRGNKVKI	HHHHHHTT---EE	aaaaaaavxxbbx
1r13_A_148	1r13	A	155	167	ASIAKKYNNYVYL	HHHHHHTTS-EEE	aaaaaaalbxbxb
1reo_A_96	1reo	A	99	111	REYIRKFGLQLNE	HHHHHHTT--EEE	aaaaaaavxxbbx
1ro2_A_42	1ro2	A	47	59	AKWMLEHGFNIIP	HHHHHHTT---EE	aaaaaaavbxbbx
1sdo_A_97	1sdo	A	101	113	KKVIEAAGKEALK	HHHHHHTT---EE	aaaaaaavbxbbx
1set_A_288	1set	A	303	315	EEILRLLELPYRL	HHHHHHTT--EEE	aaaaaaalbwbbb
1toa_A_254	1toa	A	260	272	RDAVQARGHVVQI	HHHHHTTT---EE	aaaaaaavbbbbx
1v39_*_73	1v39	-	79	91	RDHFYNLGVIIKW	HHHHHHTT---EE	aaaaaaavxxbbb
1vsr_A_26	1vsr	A	29	41	ASLLTGQGLAFRV	HHHHHHTT---EE	aaaaaaavxxbbb
1wdn_A_27	1wdn	A	33	45	AAIAKELKLDYEL	HHHHHHHT--EEE	aaaaaaavbbbbx
5nul_*_11	5nul	-	20	32	AKGIIESGKDVNT	HHHHHHTT---EE	aaaaaaagbbbbb
6mht_A_131	6mht	A	137	149	KNTMNELDYSFHA	HHHHHHTTB--EE	aaaaaaavbxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1cv8_*_67	1cv8	*	E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE	P - 67
1cv8_*_67	1cv8	*	E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE	E - 69
1cv8_*_67	1cv8	*	E64N-[N-[1-HYDROXYCARBOXYETHYL-CARBONYL]LEUCYLAMINO-BUTYL]-GUANIDINE	M - 70
1gud_A_14	1gud	A	ZNZINC ION	S - 33
1gud_A_14	1gud	A	ZNZINC ION	V - 34
1gud_A_14	1gud	A	ZNZINC ION	D - 35
1j9b_A_14	1j9b	A	CZZTHIARSAHYDROXY-CYSTEINE	T - 14
1j9b_A_14	1j9b	A	TASTRIHYDROXYARSENITE(III)	T - 14
1j9b_A_14	1j9b	A	CZZTHIARSAHYDROXY-CYSTEINE	S - 15
1j9b_A_14	1j9b	A	TASTRIHYDROXYARSENITE(III)	S - 15
1j9b_A_14	1j9b	A	CZZTHIARSAHYDROXY-CYSTEINE	R - 16
1j9b_A_14	1j9b	A	TASTRIHYDROXYARSENITE(III)	R - 16
1j9b_A_14	1j9b	A	CZZTHIARSAHYDROXY-CYSTEINE	N - 17
1oc2_A_201	1oc2	A	TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE	F - 201
1oc2_A_201	1oc2	A	TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE	I - 202
1oc2_A_201	1oc2	A	TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE	R - 204
1oc2_A_201	1oc2	A	TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE	Q - 205
1oc2_A_201	1oc2	A	TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE	K - 216
1oc2_A_201	1oc2	A	TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE	L - 217
1oc2_A_201	1oc2	A	TDXTHYMIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE	Y - 218
1qup_A_54	1qup	A	MSESELENOMETHIONINE	I - 57
1qup_A_54	1qup	A	MSESELENOMETHIONINE	L - 61
1r13_A_148	1r13	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	A - 158
1r13_A_148	1r13	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	K - 159
1r13_A_148	1r13	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	N - 162
1r13_A_148	1r13	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	N - 163
1r13_A_148	1r13	A	MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID	Y - 164
1reo_A_96	1reo	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 110
1ro2_A_42	1ro2	A	ZNZINC ION	W - 49
1ro2_A_42	1ro2	A	ZNZINC ION	E - 52
1ro2_A_42	1ro2	A	ZNZINC ION	H - 53
1v39_*_73	1v39	*	SAHS-ADENOSYL-L-HOMOCYSTEINE	T - 73
1v39_*_73	1v39	*	SAHS-ADENOSYL-L-HOMOCYSTEINE	H - 74
1v39_*_73	1v39	*	SAHS-ADENOSYL-L-HOMOCYSTEINE	I - 75
1v39_*_73	1v39	*	SAHS-ADENOSYL-L-HOMOCYSTEINE	I - 94
1v39_*_73	1v39	*	SAHS-ADENOSYL-L-HOMOCYSTEINE	D - 95
5nul_*_11	5nul	*	FMNFLAVIN MONONUCLEOTIDE	N - 11
5nul_*_11	5nul	*	FMNFLAVIN MONONUCLEOTIDE	T - 12
5nul_*_11	5nul	*	FMNFLAVIN MONONUCLEOTIDE	E - 13

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gud_A_14	1gud	A	ZN3ZN BINDING SITE FOR CHAIN A	D - 35

Clusters included in this Subclass

CLUSTER: HE.4.28

CLUSTER: HE.5.18

CLUSTER: HE.6.13

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