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Information on SUBCLASS 3.3.4
Subclass Accession number: 5479
Subclass: 3.3.4 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 23

Average sequence ID (%) : 15.0 +/- 16.2
Average RMSD (Å) : 0.839 +/- 0.183

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XhchpXh
(φψ)-conformation: aalpabb
Pattern: xx[afilmtv][afiklmv][aeknrt][adekqt][acfikl][degknqr][cfilpvy][degknqrt]x[ILMVW][acfiltv]x
Conservation:-0.821-0.769-0.1740.3080.2620.2330.2650.900-0.9370.539-1.0692.685-0.904-0.518
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a2o_A_381a2o   A4255RDLIKKFNPDVLTLHHHHHHH--SEEEEaaaaaaalxabbbb
1ajs_A_1421ajs   A144157NGVFTTAGFKDIRSHHHHHHTT-S-EEEaaaaaaagxabbbb
1aln_*_2731aln   -277290SATLKALGCHSIDRHHHHHHHT---EEEaaaaaaagxabbbb
1dz3_A_371dz3   A4154LQMLEEKRPDILLLHHHHHHH--SEEEEaaaaaaalxabbxb
1e5d_A_881e5d   A89102PALIEACQPEKIFTHHHHHHH--SEEEEaaaaaaalxabbxb
1efv_A_891efv   A97110LATQKQFNYTHICAHHHHHHH--SEEEEaaaaaaalxabbbb
1g5c_A_641g5c   A7184AVAIYALGDNEIIIHHHHHHH---EEEEaaaaaaavxabbbx
1iuk_A_871iuk   A87100LPEVLALRPGLVWLHHHHHHH--S-EEEaaaaaaalxabbbx
1j0h_A_3031j0h   A314327TYWIREFDIDGWRLHHHHHHH---EEEEaaaaaaavxabbxx
1jye_A_1631jye   A171184VEHLVALGHQQIALHHHHHHHT--SEEEaaaaaaagxabbbb
1jyk_A_381jyk   A4356IEFLKEKGINDIIIHHHHHHTT---EEEaaaaaaavxaxbbb
1k4k_A_171k4k   A2437ETLANLIGLTRVTIHHHHHHH----EEEaaaaaaavxabbbx
1k9s_A_661k9s   A7487KELITDFGVKKIIRHHHHHHH---EEEEaaaaaaavxabbbx
1leh_A_31leh   A417FKYMEKYDYEQLVFHHHHHHHT--EEEEaaaaaaalxabbbx
1nnl_A_1571nnl   A163176KLLKEKFHFKKIIMHHHHHHH--S-EEEaaaaaaalpabbbb
1nul_A_401nul   A4457ALLARELGIRHVDTHHHHHHHT---EEEaaaaaaavxaxbbb
1nv8_A_1061nv8   A114127LELIRKYGIKTVADHHHHHHHT--EEEEaaaaaaavxabbbb
1qsg_A_451qsg   A4962EEFAAQLGSDIVLQHHHHHHTT---EEEaaaaaaavbabbbx
1qv9_A_571qv9   A5770LDIAEDFEPDFIVYHHHHHHH--SEEEEaaaaaaalxabbbb
1rj9_B_1961rj9   B203216ARLKEVLGPDEVLLHHHHHHH--SEEEEaaaaaaavxabbbx
1vhw_A_671vhw   A7588TELIKDYGVKKIIRHHHHHHH---EEEEaaaaaaavxabbbx
4tmk_A_164tmk   A2437VETLEQLGIRDMVFHHHHHHTT---EEEaaaaaaavbaxbbb
6mht_A_1016mht   A105118ARIVREKKPKVVFMHHHHHHH--SEEEEaaaaaaalxabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ajs_A_1421ajs   A     PLA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-2-METHYL-SUCCINIC ACID N - 142
1ajs_A_1421ajs   A     PLA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-2-METHYL-SUCCINIC ACID H - 143
1g5c_A_641g5c   A     ZNZINC ION H - 87
1g5c_A_641g5c   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID H - 87
1jyk_A_381jyk   A     MSESELENOMETHIONINE F - 45
1k4k_A_171k4k   A     XEXENON H - 19
1k4k_A_171k4k   A     XEXENON L - 20
1k4k_A_171k4k   A     XEXENON I - 37
1k4k_A_171k4k   A     XEXENON I - 38
1k9s_A_661k9s   A     FM12-HYDROXYMETHYL-5-(7-METHYLAMINO-3H-PYRAZOLO[4,3-D] PYRIMIDIN-3-YL)-TETRAHYDRO-FURAN-3,4-DIOL I - 71
1k9s_A_661k9s   A     PO4PHOSPHATE ION R - 87
1k9s_A_661k9s   A     FM22-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL R - 87
1k9s_A_661k9s   A     PO4PHOSPHATE ION V - 88
1k9s_A_661k9s   A     PO4PHOSPHATE ION G - 89
1k9s_A_661k9s   A     FM22-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL G - 89
1k9s_A_661k9s   A     PO4PHOSPHATE ION S - 90
1k9s_A_661k9s   A     FM22-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL S - 90
1k9s_A_661k9s   A     PO4PHOSPHATE ION C - 91
1k9s_A_661k9s   A     FM22-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL C - 91
1k9s_A_661k9s   A     FM22-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL G - 92
1k9s_A_661k9s   A     FM22-(7-AMINO-6-METHYL-3H-PYRAZOLO[4,3-D]PYRIMIDIN-3-YL)-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3,4-DIOL A - 93
1nnl_A_1571nnl   A     CACALCIUM ION K - 158
1nnl_A_1571nnl   A     CACALCIUM ION G - 178
1nv8_A_1061nv8   A     SAMS-ADENOSYLMETHIONINE T - 106
1nv8_A_1061nv8   A     SAMS-ADENOSYLMETHIONINE D - 127
1nv8_A_1061nv8   A     SAMS-ADENOSYLMETHIONINE I - 128
1qv9_A_571qv9   A     MSESELENOMETHIONINE L - 57
1qv9_A_571qv9   A     MSESELENOMETHIONINE D - 58
1qv9_A_571qv9   A     MSESELENOMETHIONINE I - 59
1qv9_A_571qv9   A     MSESELENOMETHIONINE A - 60
1qv9_A_571qv9   A     MSESELENOMETHIONINE V - 69
1qv9_A_571qv9   A     MSESELENOMETHIONINE Y - 70
1qv9_A_571qv9   A     MSESELENOMETHIONINE G - 71
1rj9_B_1961rj9   B     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER V - 217
1vhw_A_671vhw   A     ADNADENOSINE I - 72
1vhw_A_671vhw   A     ADNADENOSINE R - 88
1vhw_A_671vhw   A     ADNADENOSINE G - 90
1vhw_A_671vhw   A     ADNADENOSINE S - 91
1vhw_A_671vhw   A     ADNADENOSINE C - 92
1vhw_A_671vhw   A     ADNADENOSINE G - 93
1vhw_A_671vhw   A     ADNADENOSINE A - 94
4tmk_A_164tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE K - 16
4tmk_A_164tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE T - 17
4tmk_A_164tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE T - 18
4tmk_A_164tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE A - 19
4tmk_A_164tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE R - 39
6mht_A_1016mht   A     4SC4'-THIO-2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE GROUP E - 119
6mht_A_1016mht   A     SAMS-ADENOSYLMETHIONINE E - 119
6mht_A_1016mht   A     4SC4'-THIO-2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE GROUP N - 120
6mht_A_1016mht   A     4SC4'-THIO-2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE GROUP V - 121
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1a2o_A_381a2o   A PONPHOSPHORYLATION SITED - 56

Clusters included in this Subclass
CLUSTER: HE.4.29