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Information on SUBCLASS 3.4.5
Subclass Accession number: 5491
Subclass: 3.4.5 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 10

Average sequence ID (%) : 9.3 +/- 14.8
Average RMSD (Å) : 0.880 +/- 0.181

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: pXXpphp
(φψ)-conformation: aabaaba
Pattern: xxx[afilvw]x[ekqrs]xx[DEKNPQRS][dehnqry][ilv][ehknqt]x[agkltv]x
Conservation:-0.7390.027-0.5290.019-0.8710.833-0.850-0.7360.7580.1062.7820.807-1.002-0.6830.078
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c7k_A_151c7k   A2236AQIWNSSVRNVQLRAHHHHHHH-SSEEEEEaaaaaaabaabbbbx
1dhn_*_731dhn   -8195ANRINSQYNRVMETKHHHHHHH-TTEEEEEaaaaaaabaaxabbb
1doz_A_541doz   A6882EQHLNEIQDEITFKAHHHHHHH-SSEEEEEaaaaaaabaabbbbx
1gd1_O_101gd1   O1529VFRAALKNPDIEVVAHHHHHTT-SSEEEEEaaaaaaabaabbxab
1icx_A_261icx   A2741DEIVPKVIEPIQSVEHHHHHHHSTTEEEEEaaaaaaabaaxabbb
1ifv_A_261ifv   A2741DDIIPKVIEQIQSVEHHHHHHH-SSEEEEEaaaaaaaxaaxabbb
1ln1_A_751ln1   A7589SDYRKQWDQYVKELYHHHHHHH-TTEEEEEaaaaaaaxaaxabbb
1mpx_A_1461mpx   A154168IDWLVKNVSESNGKVHHHHHHH-TTEEEEEaaaaaaabaaxavbb
1nvm_B_141nvm   B2034MIKVLRNAKYLEMGAHHHHHHH-SSEEEEEaaaaaaaxaabbxab
1r51_A_761r51   A8498GTHFIEKYNHIHAAHHHHHHHH-TTEEEEEaaaaaaabaaxabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c7k_A_151c7k   A     CACALCIUM ION E - 17
1c7k_A_151c7k   A     CACALCIUM ION N - 20
1gd1_O_101gd1   O     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 10
1gd1_O_101gd1   O     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 11
1gd1_O_101gd1   O     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 12
1gd1_O_101gd1   O     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 13
1gd1_O_101gd1   O     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 31
1ln1_A_751ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE R - 78
1ln1_A_751ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE D - 82
1ln1_A_751ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE Y - 84
1mpx_A_1461mpx   A     MSESELENOMETHIONINE H - 146
1mpx_A_1461mpx   A     CACALCIUM ION H - 146
1mpx_A_1461mpx   A     MSESELENOMETHIONINE A - 147
1mpx_A_1461mpx   A     CACALCIUM ION A - 147
1mpx_A_1461mpx   A     GOLGLYCEROL A - 147
1mpx_A_1461mpx   A     MSESELENOMETHIONINE T - 148
1mpx_A_1461mpx   A     GOLGLYCEROL T - 148
1mpx_A_1461mpx   A     MSESELENOMETHIONINE D - 149
1mpx_A_1461mpx   A     CACALCIUM ION D - 149
1mpx_A_1461mpx   A     MSESELENOMETHIONINE A - 150
1mpx_A_1461mpx   A     GOLGLYCEROL W - 151
1mpx_A_1461mpx   A     MSESELENOMETHIONINE D - 152
1mpx_A_1461mpx   A     CACALCIUM ION D - 152
1mpx_A_1461mpx   A     GOLGLYCEROL D - 152
1mpx_A_1461mpx   A     MSESELENOMETHIONINE T - 153
1mpx_A_1461mpx   A     MSESELENOMETHIONINE I - 154
1mpx_A_1461mpx   A     MSESELENOMETHIONINE W - 156
1mpx_A_1461mpx   A     MSESELENOMETHIONINE V - 168
1mpx_A_1461mpx   A     CACALCIUM ION V - 168
1nvm_B_141nvm   B     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 14
1nvm_B_141nvm   B     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 15
1nvm_B_141nvm   B     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 16
1nvm_B_141nvm   B     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 36
1r51_A_761r51   A     FCYFREE CYSTEINE H - 98
1r51_A_761r51   A     FCYFREE CYSTEINE N - 100

Clusters included in this Subclass
CLUSTER: HE.2.81
CLUSTER: HE.3.118
CLUSTER: HE.4.89