ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.2.5

Subclass Accession number: 5601
Subclass: 4.2.5

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 9

Average sequence ID (%) : 14.1 +/- 14.7
Average RMSD (Å) : 0.633 +/- 0.173

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 135-180

rho (°): 180-225

Consensus Sequence:	XpGXhphh
(φψ)-conformation:	aalababb

Pattern:	[afpv]	[hknqrt]	x	[AILY]	x	[dehks]	[GKN]	x	[acgiv]	[DHNRS]	[filvy]	[agstv]	[AFIMV]
Conservation:	-0.817	-0.128	-1.032	0.079	-0.773	0.439	2.643	-0.878	-0.435	1.118	-0.285	-0.261	0.330

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1cs8_A_27	1cs8	A	46	58	NQEYREGKHSFTM	HHHHHTT--SEEE	aaaaaavababbb
1din_*_124	1din	-	130	142	FLVAAKGYVDRAV	HHHHHHT-SSEEE	aaaaaavababbb
1gv1_A_10	1gv1	A	17	29	FRIADKKLARELV	HHHHHTT--SEEE	aaaaaalababbb
1iej_A_190	1iej	A	195	207	FHCLKDGKGDVAF	HHHHHTTS-SEEE	aaaaaavababbx
1ixh_*_38	1ixh	-	42	54	VKQIIANTVDFGA	HHHHHTT-SSEEE	aaaaaavababbb
1o63_A_49	1o63	A	50	62	PTYLVHGVADIGF	HHHHHTTS-SEEE	aaaaaavababbb
1on3_A_225	1on3	A	227	239	AHMAISGNIHFVA	HHHHTT---SEEE	aaaaaavababbb
1pot_*_215	1pot	-	215	227	ANPYMEGEVNLGM	HHHHHTTS-SEEE	aaaaaalababex
1q35_A_178	1q35	A	182	194	VKAIKEGICDYSI	HHHHHHTS-SEEE	aaaaaavababbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1din_*_124	1din	*	CSD3-SULFINOALANINE	L - 124
1din_*_124	1din	*	CSD3-SULFINOALANINE	G - 125
1din_*_124	1din	*	CSD3-SULFINOALANINE	G - 126
1din_*_124	1din	*	CSD3-SULFINOALANINE	A - 127
1din_*_124	1din	*	CSD3-SULFINOALANINE	L - 128
1din_*_124	1din	*	CSD3-SULFINOALANINE	Y - 144
1iej_A_190	1iej	A	FEFE (III) ION	Y - 191
1iej_A_190	1iej	A	CO3CARBONATE ION	Y - 191
1iej_A_190	1iej	A	CO3CARBONATE ION	F - 207
1ixh_*_38	1ixh	*	PO4PHOSPHATE ION	S - 38
1ixh_*_38	1ixh	*	PO4PHOSPHATE ION	S - 39
1ixh_*_38	1ixh	*	PO4PHOSPHATE ION	A - 54
1ixh_*_38	1ixh	*	PO4PHOSPHATE ION	S - 55
1pot_*_215	1pot	*	SPDSPERMIDINE	W - 229
1q35_A_178	1q35	A	FMTFORMIC ACID	D - 178
1q35_A_178	1q35	A	FMTFORMIC ACID	R - 179
1q35_A_178	1q35	A	FMTFORMIC ACID	D - 180
1q35_A_178	1q35	A	FMTFORMIC ACID	N - 196

Clusters included in this Subclass

CLUSTER: HE.4.250

CLUSTER: HE.5.127

CLUSTER: HE.6.98