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Information on SUBCLASS 4.7.1
Subclass Accession number: 5628
Subclass: 4.7.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 14

Average sequence ID (%) : 13.5 +/- 20.4
Average RMSD (Å) : 1.000 +/- 0.311

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: pXcXXphX
(φψ)-conformation: aalpaabb
Pattern: xxx[aily]xxx[adgkn]xxx[agil]xxx
Conservation:-0.958-0.4580.031-0.065-1.1150.633-1.3741.888-1.2500.7480.8931.4910.252-0.7510.036
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b4a_A_1031b4a   A107121GVLLDNLDWDEIVGTHHHHHHHT-TTEEEEaaaaaaalxaabaeb
1b4b_A_1031b4b   A107121GVLLDNLDWDEIVGTHHHHHHH--TTEEEEaaaaaaalxaaxabb
1dqz_A_2221dqz   A239253RDTYAADGGRNGVFNHHHHHHTT--SEEEEaaaaaaavxNabbbb
1f0n_A_2241f0n   A241255QDAYNAAGGHNAVFNHHHHHHTT--SEEEEaaaaaaavxaabbbb
1gpu_A_1631gpu   A169183SSLAGHLKLGNLIAIHHHHHHTT-TTEEEEaaaaaaalxaaxbbb
1hdg_O_101hdg   O1630YRIIYERKNPDIEVVHHHHHHHT-TT-EEEaaaaaaalxaabbxa
1io0_A_1831io0   A186200TLKRIQNNDPDLEEVHHHHHHTT-TT--EEaaaaaaalpaaxabb
1itz_A_1741itz   A180194CSLAGHWGLGKLIAFHHHHHHTT-TTEEEEaaaaaaalxaaxbbb
1jji_A_1611jji   A170184SIMARDSGEDFIKHQHHHHHHTT---EEEEaaaaaaavxaaxabb
1l8a_A_2421l8a   A242256ITIATREKLDNLVFVHHHHHHTT-TTEEEEaaaaaaalxaabbxb
1qgd_A_1611qgd   A167181CSLAGTLKLGKLIAFHHHHHHTT-TTEEEEaaaaaaalxaaxbbb
1r88_A_2461r88   A257271YNQYRSVGGHNGHFDHHHHHHTT--SEEEEaaaaaaavxaabbbb
1tmk_A_1541tmk   A168182LDKEIRKGDESITIVHHHHHHTT-TTEEEEaaaaaaagxaaxbxb
4mdh_A_464mdh   A5367LMELQDCALPLLKDVHHHHHHT--TTEEEEaaaaaaalbaaxabb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1f0n_A_2241f0n   A     MPD2-METHYL-2,4-PENTANEDIOL L - 229
1f0n_A_2241f0n   A     MPD2-METHYL-2,4-PENTANEDIOL F - 232
1f0n_A_2241f0n   A     MPD2-METHYL-2,4-PENTANEDIOL V - 233
1f0n_A_2241f0n   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID H - 250
1f0n_A_2241f0n   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID N - 251
1f0n_A_2241f0n   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID A - 252
1f0n_A_2241f0n   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID V - 253
1gpu_A_1631gpu   A     CACALCIUM ION D - 185
1gpu_A_1631gpu   A     THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE D - 185
1gpu_A_1631gpu   A     CACALCIUM ION D - 186
1hdg_O_101hdg   O     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 10
1hdg_O_101hdg   O     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 11
1hdg_O_101hdg   O     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 12
1hdg_O_101hdg   O     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 13
1itz_A_1741itz   A     MGMAGNESIUM ION D - 196
1itz_A_1741itz   A     TPPTHIAMINE DIPHOSPHATE D - 196
1itz_A_1741itz   A     MGMAGNESIUM ION D - 197
1jji_A_1611jji   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID A - 161
1jji_A_1611jji   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID G - 162
1l8a_A_2421l8a   A     TDPTHIAMIN DIPHOSPHATE N - 258
1l8a_A_2421l8a   A     MGMAGNESIUM ION N - 258
1l8a_A_2421l8a   A     MGMAGNESIUM ION C - 259
1qgd_A_1611qgd   A     CACALCIUM ION D - 183
1qgd_A_1611qgd   A     TPPTHIAMINE DIPHOSPHATE D - 183
1tmk_A_1541tmk   A     TMPTHYMIDINE-5'-PHOSPHATE Q - 157

Clusters included in this Subclass
CLUSTER: HE.4.83
CLUSTER: HE.5.95
CLUSTER: HE.6.155
CLUSTER: HE.6.63