ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 4.20.1

Subclass Accession number: 5665
Subclass: 4.20.1

PSSM

Type: HE alpha-beta
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 11

Average sequence ID (%) : 13.8 +/- 14.9
Average RMSD (Å) : 0.827 +/- 0.443

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XXXXcXpX
(φψ)-conformation:	aabpgpbb

Pattern:	x	[AILV]	[efhkry]	x	[fiklv]	x	x	[aekl]	x	[kprs]	[DGN]	x	[aeknst]	[ailtv]	x
Conservation:	-0.169	1.191	-0.397	-0.561	-0.631	-0.502	-0.971	-0.562	-0.793	0.781	2.834	-0.077	0.007	0.588	-0.738

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1amx_*_239	1amx	-	239	253	AITDFEKAFPGSKIT	HHHHHHHHSTT-EEE	aaaaaaaabpgxbbb
1ei1_A_184	1ei1	A	190	204	RLRELSFLDSGVSIR	HHHHHHHHSTT-EEE	aaaaaaaabxvbxbb
1g66_A_23	1g66	A	25	39	VVNGVLSAYPGSTAE	HHHHHHHHSTT-EEE	aaaaaaaabpvxbbb
1gde_A_14	1gde	A	17	30	KLFDIAAGMKDVIS.	HHHHHHHH-TT-EE.	aaaaaaaaxxvxxx.
1kij_A_184	1kij	A	190	204	RLREVAYLVAGLKLV	HHHHHHHHTTT-EEE	aaaaaaaabpgxbbb
1l8a_A_366	1l8a	A	371	385	AAFKKAQETKGKATV	HHHHHHHH--SS-EE	aaaaaaaaxbvbxbb
1mtz_A_248	1mtz	A	250	264	VARVIHEKIAGSELH	HHHHHHHHSTT-EEE	aaaaaaaaxpvxbbb
1od6_A_96	1od6	A	102	116	MAHLNRQLYPGLETL	HHHHHHHHTTT-EEE	aaaaaaaabpvxxbb
1p9l_A_81	1p9l	A	86	100	QVESWLVAKPNTSVL	HHHHHHHTSTT-EEE	aaaaaaaabxvbbbb
1pvg_A_221	1pvg	A	222	236	RVYDINGSVRDINVY	HHHHHHHHSTT-EEE	aaaaaaaaxxvbbbb
1s14_A_1181	1s14	A	1187	1201	VLKAKAVLCPGVEIT	HHHHHHHHSTT-EEE	aaaaaaaabpgxxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1gde_A_14	1gde	A	GLUGLUTAMIC ACID	I - 15
1od6_A_96	1od6	A	PNS4'-PHOSPHOPANTETHEINE	Y - 98
1od6_A_96	1od6	A	PNS4'-PHOSPHOPANTETHEINE	E - 99
1od6_A_96	1od6	A	PNS4'-PHOSPHOPANTETHEINE	Q - 101
1od6_A_96	1od6	A	PNS4'-PHOSPHOPANTETHEINE	M - 102
1od6_A_96	1od6	A	PNS4'-PHOSPHOPANTETHEINE	A - 103
1od6_A_96	1od6	A	PNS4'-PHOSPHOPANTETHEINE	L - 105
1od6_A_96	1od6	A	PNS4'-PHOSPHOPANTETHEINE	N - 106
1od6_A_96	1od6	A	PNS4'-PHOSPHOPANTETHEINE	L - 109
1pvg_A_221	1pvg	A	MSESELENOMETHIONINE	R - 221
1pvg_A_221	1pvg	A	MSESELENOMETHIONINE	R - 222
1pvg_A_221	1pvg	A	MSESELENOMETHIONINE	V - 223
1pvg_A_221	1pvg	A	MSESELENOMETHIONINE	Y - 224
1pvg_A_221	1pvg	A	MSESELENOMETHIONINE	D - 225
1pvg_A_221	1pvg	A	MSESELENOMETHIONINE	R - 231
1pvg_A_221	1pvg	A	MSESELENOMETHIONINE	D - 232
1pvg_A_221	1pvg	A	MSESELENOMETHIONINE	I - 233
1pvg_A_221	1pvg	A	MSESELENOMETHIONINE	L - 237

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1od6_A_96	1od6	A	AC2SO4 BINDING SITE FOR CHAIN A	H - 104
1od6_A_96	1od6	A	AC2SO4 BINDING SITE FOR CHAIN A	R - 107
1od6_A_96	1od6	A	AC2SO4 BINDING SITE FOR CHAIN A	Q - 108
1od6_A_96	1od6	A	AC4SO4 BINDING SITE FOR CHAIN A	Y - 110

Clusters included in this Subclass

CLUSTER: HE.4.74