Logo
Information on SUBCLASS 3.6.1
Subclass Accession number: 586
Subclass: 3.6.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 28

Average sequence ID (%) : 32.0 +/- 24.2
Average RMSD (Å) : 0.446 +/- 0.143

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XhXcXGX
(φψ)-conformation: bbpgaeb
Pattern: x[filv][ehkpqrst][dgnrs]x[G]x
Conservation:-0.613-0.029-0.5340.416-0.6032.073-0.711
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b8z_A_421b8z   A4349QIVGFGSEETTTEEbbpvaeb
1clc_*_1171clc   -122128AVPGVGKEETTTEEbbpvaeb
1d2e_A_2641d2e   A267273SIPGRGTEETTTEEbbpvaex
1exm_A_2271exm   A230236TITGRGTEETTTEEbbpvaex
1feh_A_501feh   A5258EVEGTGLEETTTEEbbpgaex
1fl0_A_2941fl0   A294300EVKGKGVEETTTEEbbpvaex
1gef_A_751gef   A8187KFLNVGWEETTTEEbxpvaex
1gkz_A_3531gkz   A358364SLQGIGTEETTTEExbpgaeb
1gtr_A_5151gtr   A517523QFEREGYEETTTEExxpvaeb
1gtt_A_4071gtt   A411417EVEGVGREETTTEEbbpvaeb
1gxq_A_2151gxq   A217223TVRGTGYEETTTEExbplaeb
1i58_A_5201i58   A525531SEKDKGTEETTTEEbbpvaeb
1j93_A_941j93   A96102IIKGKGPEETTTEExxpgaew
1jp4_A_1671jp4   A171177GVLGLGAEETTTEEbbxvaeb
1k0w_A_1651k0w   A167173LVHSHGPEETTTEEbxpUaex
1kgs_A_2121kgs   A214220TVRGIGYEETTTEEbbpvaeb
1ko7_A_1981ko7   A200206EIRGLGIEETTTEEbbpgaex
1nvm_B_2581nvm   B259265NIPGLGREETTTEExbpvaeb
1oa8_A_6511oa8   A652658FVFGQGWEETTTEExxpvaex
1ofz_A_2861ofz   A292298WISGKGWEETTTEExbpvaex
1oke_A_1711oke   A174180ELTGYGTEETTTEExxpvaeb
1q7e_A_3581q7e   A362368EQPLRGKEETTTEExbpgaex
1r3s_A_991r3s   A100106MVPGKGPEETTTEEbxplaew
1r51_A_1271r51   A134140VVEGKGIEETTTEEbbpvaeb
1rwh_A_5641rwh   A566572HLEGFGGEETTTEEbbpvaeb
1vdw_A_1231vdw   A127133GIPGKGSEETTTEEbbpvaeb
1vju_A_421vju   A4652TREGGGGEETTTEEbbxvaee
2reb_*_2572reb   -262268ILYGEGIEETTTEEbxpvaex
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1feh_A_501feh   A     FESFE2/S2 (INORGANIC) CLUSTER T - 50
1feh_A_501feh   A     FESFE2/S2 (INORGANIC) CLUSTER T - 60
1gkz_A_3531gkz   A     ADPADENOSINE-5'-DIPHOSPHATE L - 356
1gkz_A_3531gkz   A     ADPADENOSINE-5'-DIPHOSPHATE G - 363
1gkz_A_3531gkz   A     ADPADENOSINE-5'-DIPHOSPHATE T - 364
1gkz_A_3531gkz   A     ADPADENOSINE-5'-DIPHOSPHATE V - 366
1i58_A_5201i58   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER G - 530
1i58_A_5201i58   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER T - 531
1i58_A_5201i58   A     ACPPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER V - 533
1k0w_A_1651k0w   A     ZNZINC ION H - 171
1k0w_A_1651k0w   A     ZNZINC ION G - 172
1k0w_A_1651k0w   A     ZNZINC ION F - 174
1kgs_A_2121kgs   A     SCNTHIOCYANATE ION H - 213
1kgs_A_2121kgs   A     SCNTHIOCYANATE ION V - 221
1ko7_A_1981ko7   A     PO4PHOSPHATE ION E - 200
1ko7_A_1981ko7   A     PO4PHOSPHATE ION R - 202
1ofz_A_2861ofz   A     FULBETA-L-FUCOSE W - 292
1ofz_A_2861ofz   A     FULBETA-L-FUCOSE W - 298
1q7e_A_3581q7e   A     MSESELENOMETHIONINE Y - 369
1q7e_A_3581q7e   A     MSESELENOMETHIONINE L - 370
1q7e_A_3581q7e   A     MSESELENOMETHIONINE T - 371
1q7e_A_3581q7e   A     MSESELENOMETHIONINE V - 372
1r3s_A_991r3s   A     1CPCOPROPORPHYRIN I M - 100
1r3s_A_991r3s   A     1CPCOPROPORPHYRIN I G - 105
1r3s_A_991r3s   A     1CPCOPROPORPHYRIN I P - 106
1vju_A_421vju   A     MSESELENOMETHIONINE R - 56
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ofz_A_2861ofz   A AC5FUL BINDING SITE FOR CHAIN AW - 292
1ofz_A_2861ofz   A AC5FUL BINDING SITE FOR CHAIN AW - 298

Clusters included in this Subclass
CLUSTER: HA.2.16