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Information on SUBCLASS 2.1.9
Subclass Accession number: 6043
Subclass: 2.1.9 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 13

Average sequence ID (%) : 7.4 +/- 10.5
Average RMSD (Å) : 0.477 +/- 0.130

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XXpXph
(φψ)-conformation: bblgbp
Pattern: [fgltv]xxxx[dhnqsy][degknqs][aenqrst][cflmpvwy]x
Conservation:-1.049-0.635-0.789-0.8350.0490.8042.0281.082-0.212-0.444
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bxo_A_171bxo   A1928TPVTIGGTTLEEEEETTEEEbwbbblvbxb
1ea5_A_181ea5   A1827TRVPVLSSHIEEEEETTEEEbxbwblvbbb
1ekm_A_2751ekm   A281290VSYNDHGNVREEEEETTEEExbbxxlgxxb
1fon_A_101fon   A1625LQYEKDGAFHEEEEETTEEExbbxblvbxb
1gj7_B_1981gj7   B199208LVCSLQGRMTEEEEETTEEEbbbxblvbxb
1gvk_B_1981gvk   B199208LHCLVNGQYAEEEEETTEEEbxbxblvbxb
1hkk_A_531hkk   A5867FAGMTNHQLSEEEEETTEEEwxbbblvbpb
1iqw_H_921iqw   H98107RNRDYSNNWYEEEEETTEEExxbbblvxxb
1jlx_A_1741jlx   A176185GVITINQLPCEEEEETTEEEbxbxblvbwx
1n08_A_631n08   A6776GYAMVQKRVFEEEEETTEEEebbbblvbbb
1n9e_A_4201n9e   A424433TDTFEYDEFYEEEEETTEEEbbbbblvbxb
1qy1_A_511qy1   A5665FHTVRDEECSEEEEETTEEEbbbbblvbxb
1thf_D_1251thf   D130139DAKRVDGEFMEEEEETTEEExbbxblvbxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bxo_A_171bxo   A     MANALPHA-D-MANNOSE P - 20
1bxo_A_171bxo   A     PP7METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUTYL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL)PHENYLPROPANOATE N - 31
1bxo_A_171bxo   A     PP7METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUTYL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL)PHENYLPROPANOATE D - 33
1ekm_A_2751ekm   A     ZNZINC ION V - 303
1gj7_B_1981gj7   B     1326-CHLORO-2-(2-HYDROXY-BIPHENYL-3-YL)-1H-INDOLE-5-CARBOXAMIDINE V - 213
1gj7_B_1981gj7   B     1326-CHLORO-2-(2-HYDROXY-BIPHENYL-3-YL)-1H-INDOLE-5-CARBOXAMIDINE S - 214
1gj7_B_1981gj7   B     1326-CHLORO-2-(2-HYDROXY-BIPHENYL-3-YL)-1H-INDOLE-5-CARBOXAMIDINE W - 215
1hkk_A_531hkk   A     AMIALLOSAMIZOLINE A - 57
1hkk_A_531hkk   A     NAAN-ACETYL-D-ALLOSAMINE F - 58
1hkk_A_531hkk   A     AMIALLOSAMIZOLINE F - 58
1hkk_A_531hkk   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS H - 64
1hkk_A_531hkk   A     ZNZINC ION H - 64
1n9e_A_4201n9e   A     NAGN-ACETYL-D-GLUCOSAMINE T - 423
1n9e_A_4201n9e   A     NAGN-ACETYL-D-GLUCOSAMINE F - 432
1n9e_A_4201n9e   A     NAGN-ACETYL-D-GLUCOSAMINE N - 434
1n9e_A_4201n9e   A     NAGN-ACETYL-D-GLUCOSAMINE R - 435
1n9e_A_4201n9e   A     NAGN-ACETYL-D-GLUCOSAMINE T - 436
1qy1_A_511qy1   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE L - 54
1qy1_A_511qy1   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE F - 56
1qy1_A_511qy1   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE M - 69
1thf_D_1251thf   D     PO4PHOSPHATE ION T - 142
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1bxo_A_171bxo   A CICCATALYTIC RESIDUESD - 33
1hkk_A_531hkk   A AC2NAA BINDING SITE FOR CHAIN AF - 58
1hkk_A_531hkk   A AC8ZN2 BINDING SITE FOR CHAIN AH - 64

Clusters included in this Subclass
CLUSTER: HA.1.138
CLUSTER: HA.1.69
CLUSTER: HA.2.37