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PDB code:

Information on SUBCLASS 4.10.1

Subclass Accession number: 6290 Subclass: 4.10.1 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 17 Average sequence ID (%) : 16.0 +/- 16.2 Average RMSD (Å) : 1.147 +/- 0.221 Consensus geometry d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ais_A_137	1ais	A	139	148	YRVKEPKSVI	EEETTTTEEE	bxxabwpbbb
1bk1_*_65	1bk1	-	71	80	GWVNYPQAEY	EEETTTTEEE	bbbabwxbbb
1eje_A_49	1eje	A	51	60	PVSIDPPVVA	EEETTTTEEE	xababwwbbb
1elu_A_360	1elu	A	360	369	RTIADPDCIR	EEETTTTEEE	bxbabwxbbb
1h09_A_171	1h09	A	175	184	QYSSNPFDKN	EEE-SSS-EE	xababwbxbb
1hcu_A_158	1hcu	A	158	167	TVFFNPTVRR	EEE-SSS-EE	bbbabwbxbx
1i0r_A_32	1i0r	A	34	43	QLTSKPVQIA	EEETTTTEEE	xababwxbbb
1j0m_A_747	1j0m	A	749	758	VTQLAPTIKF	EEE-SSSEEE	xababwbxbb
1jbw_A_302	1jbw	A	303	312	KISDTPLIVI	EEETTTTEEE	xababwxbbb
1mp8_A_486	1mp8	A	488	497	GVITENPVWI	EEE-SSS-EE	ebbabpwxbb
1mp9_A_141	1mp9	A	143	152	YRMDEPRVVL	EEETTTTEEE	bxxabwxbbb
1nh2_A_193	1nh2	A	195	204	YRMVKPKIVL	EEETTTTEEE	bxxabwxbbb
1o7k_A_15	1o7k	A	15	24	EKRFVPSQHY	EEE-SSSSEE	bxbabwbxbb
1ozn_A_32	1ozn	A	32	41	VCYNEPKVTT	EEE-SSS-EE	bbbabwbxbb
1qna_A_59	1qna	A	62	71	MRIREPKTTA	EEETTTTEEE	bbbabwxbbb
1sox_A_108	1sox	A	109	118	VNSQKPFNAE	EEETTTTEEE	xababwxbbb
2bbk_H_137	2bbk	H	140	149	FYQFSPAPAV	EEE-SSS-EE	bxbabwbxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ais_A_137	1ais	A	5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE	R - 140
1ais_A_137	1ais	A	5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE	K - 145
1ais_A_137	1ais	A	5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE	S - 146
1ais_A_137	1ais	A	5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE	V - 147
1eje_A_49	1eje	A	FMNFLAVIN MONONUCLEOTIDE	T - 49
1eje_A_49	1eje	A	FMNFLAVIN MONONUCLEOTIDE	A - 62
1eje_A_49	1eje	A	FMNFLAVIN MONONUCLEOTIDE	S - 63
1elu_A_360	1elu	A	PDA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID	R - 360
1elu_A_360	1elu	A	CSSS-MERCAPTOCYSTEINE	R - 360
1elu_A_360	1elu	A	CSSS-MERCAPTOCYSTEINE	T - 361
1elu_A_360	1elu	A	PDA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID	I - 362
1elu_A_360	1elu	A	PDA2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID	R - 369
1hcu_A_158	1hcu	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 162
1i0r_A_32	1i0r	A	FMNFLAVIN MONONUCLEOTIDE	V - 32
1i0r_A_32	1i0r	A	FMNFLAVIN MONONUCLEOTIDE	C - 45
1i0r_A_32	1i0r	A	FMNFLAVIN MONONUCLEOTIDE	L - 46
1i0r_A_32	1i0r	A	FMNFLAVIN MONONUCLEOTIDE	N - 47
1jbw_A_302	1jbw	A	ACQDIPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER	D - 313
1mp8_A_486	1mp8	A	ADPADENOSINE-5'-DIPHOSPHATE	M - 499
1mp8_A_486	1mp8	A	ADPADENOSINE-5'-DIPHOSPHATE	E - 500
1nh2_A_193	1nh2	A	5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE	I - 194
1nh2_A_193	1nh2	A	5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE	R - 196
1nh2_A_193	1nh2	A	5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE	V - 203
1nh2_A_193	1nh2	A	5IU5-IODO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE	L - 205
1o7k_A_15	1o7k	A	MSESELENOMETHIONINE	E - 15
1o7k_A_15	1o7k	A	MSESELENOMETHIONINE	V - 25

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1bk1_*_65	1bk1	*	ASGLU 79 AND GLU 170 REFER TO THE CATALYTIC ACIDIC RESIDUES.	E - 79

Clusters included in this Subclass

CLUSTER: HA.4.43

CLUSTER: HA.5.40

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