Logo
Information on SUBCLASS 5.4.4
Subclass Accession number: 6365
Subclass: 5.4.4 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 6

Average sequence ID (%) : 18.7 +/- 18.7
Average RMSD (Å) : 0.633 +/- 0.137

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 0-45
Consensus Sequence: XhXpcGchX
(φψ)-conformation: bbpaalpbb
Pattern: [afikt][klv][adegt][AKNS][DKN][GK][AKN][ILPVY][klv][glvy]
Conservation:-0.972-0.454-0.9950.2551.2201.9930.489-0.243-0.332-0.962
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1amu_A_4071amu   A416425RWLSDGNIEYEE-TTS-EEEbxxaavxxbx
1euo_A_801euo   A8796TVDKKKAVLKEE-TT--EEEbbxaavxxab
1gpm_A_1281gpm   A128137ALTADGKPLLEE-TTS-EEEbbxaavxwbb
1jlx_A_1651jlx   A167176FKGNNGKYLGEE-TTS-EEEbbxaavxbxb
1n1t_A_1871n1t   A187196IVASNGNLVYEE-TTS-EEEbbxaavxxbb
1np1_A_811np1   A8897KVEKNGNVKVEE-TT--EEExbxaavxxab
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1amu_A_4071amu   A     MGMAGNESIUM ION Y - 409
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE T - 411
1amu_A_4071amu   A     MGMAGNESIUM ION T - 411
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE D - 413
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE Y - 425
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE G - 427
1amu_A_4071amu   A     AMPADENOSINE MONOPHOSPHATE R - 428
1euo_A_801euo   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 81
1euo_A_801euo   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 85
1euo_A_801euo   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 86
1euo_A_801euo   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 87
1gpm_A_1281gpm   A     CITCITRIC ACID S - 142
1gpm_A_1281gpm   A     CITCITRIC ACID H - 143
1n1t_A_1871n1t   A     DAN2-DEOXY-2,3-DEHYDRO-N-ACETYL-NEURAMINIC ACID Q - 199
1np1_A_811np1   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 86
1np1_A_811np1   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 87
1np1_A_811np1   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 88
1np1_A_811np1   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 97

Clusters included in this Subclass
CLUSTER: HA.6.68