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Information on SUBCLASS 6.4.1
Subclass Accession number: 6435
Subclass: 6.4.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 27

Average sequence ID (%) : 12.7 +/- 20.8
Average RMSD (Å) : 1.374 +/- 0.306

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: XXXXXpXXXX
(φψ)-conformation: bbapaababb
Pattern: xxxxxxxxxxxxxx
Conservation:-0.262-0.831-0.016-0.4991.0031.2452.258-0.905-1.008-0.251-0.081-0.653-1.000-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a1h_A_1051a1h   A105116YACPVESCDRRF..EE--SSS---EE..xbxapaaxabbb..
1a1i_A_1051a1i   A105116YACPVESCDRRF..EE--STT---EE..bxxaxaabaxbb..
1aay_A_1051aay   A105116YACPVESCDRRF..EE---TT---EE..bxxaxaabaxbb..
1bht_A_1881bht   A189200CFTSNPEVRYEV..EEBS-TT-SEEE..bxxaxaababbx..
1cea_A_611cea   A6273CYTTDPEKRYDY..EEBS-TT--EEE..bxxaxaababbx..
1crz_A_1451crz   A150163VQTNGGQFPYELRVEE-S-SSS-EEEEEbbxaxaabaxbxbb
1dok_A_251dok   A2942RRITSSKCPKEAVIEEE--TTSSS-EEEbxxapaaxabxbbb
1esr_A_251esr   A2942TRITNIQCPKEAVIEE---TTSSS--EEbbxaxaaxabxbbb
1f2i_G_11051f2i   G11051116YACPVESCDRRF..EE-SSTT---EE..xxpwxaabaxbb..
1gmn_B_1881gmn   B189200CFTSNPEVRYEV..EEBSSTT--EEE..bxbaxaababbx..
1i71_A_601i71   A6172CYTMDPSVRWEY..EEBSSTT--EEE..bxbaxaababbx..
1jlx_A_671jlx   A6881LVRWSPNHYWITASEEESSTT--BEEEExbxabaabaxxbxN
1k32_A_4601k32   A466479PLKHGETDGYVMQAEE-SSTT-S--EEExbbabaaxabxxbb
1k3t_A_631k3t   A6578TTKSSPSVAKDDTLEE-SSTT-SS--EEbbbabaapaxpabx
1ki0_A_1441ki0   A145156CYTTDPEKRYDY..EEBS-TT-SEEE..bxbaxaababbx..
1ki0_A_2251ki0   A226237CFTTDPNKRWEL..EEBS-TT-SEEE..bxbaxaababbx..
1ki0_A_3151ki0   A316327CHTTNSQVRWEY..EEBSSTT-SEEE..bxbaxaababbx..
1kob_A_1801kob   A180192IMCETKKASSVKI.EEESSTT---EEE.bbxabaaxabbbx.
1lf6_A_921lf6   A97110VEKFTDKSLGYKLVEEESSTT---EEEEbbxabaababbbbb
1nl1_A_1261nl1   A127138CYTTSPTLRREE..EEBSSTT--EEE..bxbaxaababbx..
1oej_A_1201oej   A126139FECKDPESKAPKYIEE---TT--S-SEEbbxaxaaxappabb
1qla_A_5621qla   A566579ASWPNPEQTLPTLEEE--STT-SS-EEEbbbabaaxabxxbb
1sbs_H_941sbs   H100113RGAYYRYDYAMDYWEE-SSTT---EEEExxpapaaxapbabb
1tki_A_1501tki   A150162IIYQTRRSSTIKI.EEESSSS---EEE.bbxabaaxaxbbx.
2pva_A_382pva   A3848.IRLLEKENVVI...EES-SSS--EE...bxabaabaxbb..
3kiv_*_623kiv   -6374CFTTDPSIRWEY..EEBSSTT--EEE..bxbaxaababbx..
5hpg_A_625hpg   A6374CYTTNPRKLYDY..EEBS-TT--EEE..bxbaxaababbx..
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a1h_A_1051a1h   A     ZNZINC ION C - 107
1a1h_A_1051a1h   A     ZNZINC ION P - 108
1a1h_A_1051a1h   A     ZNZINC ION V - 109
1a1h_A_1051a1h   A     ZNZINC ION C - 112
1a1h_A_1051a1h   A     ZNZINC ION D - 113
1a1h_A_1051a1h   A     ZNZINC ION R - 114
1aay_A_1051aay   A     ZNZINC ION F - 116
1bht_A_1881bht   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID W - 188
1bht_A_1881bht   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID F - 190
1bht_A_1881bht   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID R - 197
1bht_A_1881bht   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID Y - 198
1bht_A_1881bht   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID V - 200
1cea_A_611cea   A     ACA6-AMINOHEXANOIC ACID W - 61
1cea_A_611cea   A     ACA6-AMINOHEXANOIC ACID Y - 63
1cea_A_611cea   A     ACA6-AMINOHEXANOIC ACID R - 70
1cea_A_611cea   A     ACA6-AMINOHEXANOIC ACID Y - 71
1cea_A_611cea   A     ACA6-AMINOHEXANOIC ACID Y - 73
1crz_A_1451crz   A     MSESELENOMETHIONINE V - 149
1f2i_G_11051f2i   G     ZNZINC ION C - 1107
1f2i_G_11051f2i   G     ZNZINC ION P - 1108
1f2i_G_11051f2i   G     ZNZINC ION V - 1109
1f2i_G_11051f2i   G     ZNZINC ION C - 1112
1f2i_G_11051f2i   G     ZNZINC ION D - 1113
1f2i_G_11051f2i   G     ZNZINC ION R - 1114
1f2i_G_11051f2i   G     ZNZINC ION F - 1116
1jlx_A_671jlx   A     NGAN-ACETYL-D-GALACTOSAMINE W - 71
1jlx_A_671jlx   A     GALD-GALACTOSE N - 74
1jlx_A_671jlx   A     NGAN-ACETYL-D-GALACTOSAMINE N - 74
1jlx_A_671jlx   A     GALD-GALACTOSE H - 75
1jlx_A_671jlx   A     NGAN-ACETYL-D-GALACTOSAMINE H - 75
1jlx_A_671jlx   A     NGAN-ACETYL-D-GALACTOSAMINE Y - 76
1jlx_A_671jlx   A     MBNTOLUENE Y - 76
1jlx_A_671jlx   A     NGAN-ACETYL-D-GALACTOSAMINE W - 77
1jlx_A_671jlx   A     MBNTOLUENE W - 77
1ki0_A_1441ki0   A     BCNBICINE W - 144
1ki0_A_1441ki0   A     BCNBICINE Y - 146
1ki0_A_1441ki0   A     BCNBICINE R - 153
1ki0_A_1441ki0   A     BCNBICINE Y - 154
1ki0_A_1441ki0   A     BCNBICINE Y - 156
1ki0_A_2251ki0   A     BCNBICINE W - 225
1ki0_A_2251ki0   A     BCNBICINE F - 227
1ki0_A_2251ki0   A     BCNBICINE R - 234
1ki0_A_2251ki0   A     BCNBICINE W - 235
1ki0_A_3151ki0   A     BCNBICINE W - 315
1ki0_A_3151ki0   A     BCNBICINE H - 317
1ki0_A_3151ki0   A     BCNBICINE R - 324
1ki0_A_3151ki0   A     BCNBICINE W - 325
1oej_A_1201oej   A     NINICKEL (II) ION S - 142
3kiv_*_623kiv   *     ACA6-AMINOHEXANOIC ACID W - 62
3kiv_*_623kiv   *     ACA6-AMINOHEXANOIC ACID F - 64
3kiv_*_623kiv   *     ACA6-AMINOHEXANOIC ACID R - 71
3kiv_*_623kiv   *     ACA6-AMINOHEXANOIC ACID W - 72
3kiv_*_623kiv   *     ACA6-AMINOHEXANOIC ACID Y - 74
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1jlx_A_671jlx   A S1CARBOHYDRATE BINDING SITE.N - 74
1jlx_A_671jlx   A S1CARBOHYDRATE BINDING SITE.H - 75
3kiv_*_623kiv   * LBSLYSINE BINDING SITEW - 62
3kiv_*_623kiv   * LBSLYSINE BINDING SITER - 71
3kiv_*_623kiv   * LBSLYSINE BINDING SITEW - 72

Clusters included in this Subclass
CLUSTER: HA.7.9
CLUSTER: HA.8.3
CLUSTER: HA.8.35
CLUSTER: HA.9.7