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PDB code:

Information on SUBCLASS 4.3.2

Subclass Accession number: 650 Subclass: 4.3.2 Type: HA beta-beta hairpin DB: ArchDB40 Image coordinates: Consensus coordinates:

Number of loops: 31 Average sequence ID (%) : 12.3 +/- 15.0 Average RMSD (Å) : 0.442 +/- 0.255 Consensus geometry d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 315-360

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a7t_A_5	1a7t	A	5	13	.VKISDDISI	.EE-SSSEEE	.bxabaabbb
1agj_A_55	1agj	A	59	68	GVLIGKNTVL	EEE-SSSEEE	bbxabaabbb
1bdf_A_13	1bdf	A	16	25	IEQVSSTHAK	EEESSSSEEE	bbxabaabbb
1ddw_A_68	1ddw	A	68	76	.TKTSQKFGQ	.EE-SSSEEE	.bxabaabbb
1dle_A_40	1dle	A	44	53	GAVVSEYFVL	EEE-SSSEEE	bbxabaabbx
1eaq_A_63	1eaq	A	63	72	VRTDSPNFLS	EE-SSTTEEE	bxbabaabbb
1eq9_A_39	1eq9	A	44	53	ASILDNNNVL	EEE-SSSEEE	bbxabaabbx
1fep_A_654	1fep	A	662	671	TWDVTKNVSL	EEE-SSSEEE	bbxabaabbb
1fjs_A_40	1fjs	A	44	53	GTILSEFYIL	EEE-SSSEEE	bbxabaabbb
1h8d_H_38	1h8d	H	44	53	ASLISDRWVL	EEE-SSSEEE	bbxabaabbb
1j23_A_39	1j23	A	39	47	.YIISEDVAI	.EE-SSSEEE	.bbabaaxbb
1jg1_A_179	1jg1	A	188	197	PVGSYHLWQE	EE-SSSS-EE	wbbabaabbb
1jo8_A_24	1jo8	A	28	37	IEFVDDDWWL	EE--SSSEEE	xbxabaabbb
1jss_A_99	1jss	A	105	114	LEHFEENCCV	EEE-STTEEE	abbabaabbb
1kli_H_39	1kli	H	44	53	GTLINTIWVV	EEE-SSSEEE	bbxabaabbb
1mkf_A_339	1mkf	A	342	351	VEGQSQNVLQ	EE-SSTTEEE	bxxabaabbb
1nbw_A_468	1nbw	A	469	478	AKVESLFSIR	EEE-SSSEEE	bbxabaabbb
1nqe_A_544	1nqe	A	552	561	AYPVTSHLTV	EEESSSSEEE	bbxabaabbb
1nsc_A_274	1nsc	A	278	287	CGFASNKTIE	EEESSSSEEE	bbxabaabbb
1o9w_A_71	1o9w	A	73	82	IYGLTEEVGL	EEESSSSEEE	xxxabaabbb
1ohe_A_48	1ohe	A	49	58	YLDITDRLCF	EEESSSSEEE	bbxabaabbb
1orv_A_60	1orv	A	60	69	LQWISDHEYL	EEE-SSSEEE	bbxabaNbbx
1p57_B_39	1p57	B	44	53	GSLLSGDWVL	EEESSSSEEE	bbxabaabbb
1pgu_A_256	1pgu	A	259	268	LSWLDSQKFA	EEESSSSEEE	bbxabaabbb
1rie_*_185	1rie	-	185	194	YEFTSDDMVI	EEESSSSEEE	bbxabaabbb
1s9r_A_217	1s9r	A	217	226	VFIYNNDTLV	EEE-SSSEEE	xbbabaabxb
1s9r_A_274	1s9r	A	274	283	LTMLDKDKFL	EEE-SSSEEE	bbbabaabbb
1sty_*_10	1sty	-	15	24	IKAIDGDTVK	EEE-SSSEEE	abxabaabbx
1uc2_A_6	1uc2	A	6	14	.KRIDKIRWE	.EE-SSSEEE	.bxabaabbb
1utc_A_110	1utc	A	111	120	WKWISLNTVA	EEESSSSEEE	bbxabaabbx
1vio_A_165	1vio	A	166	175	LEILDDYNVN	EEE-SSSEEE	bbxabaabbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ddw_A_68	1ddw	A	MSESELENOMETHIONINE	W - 77
1ddw_A_68	1ddw	A	MSESELENOMETHIONINE	A - 78
1ddw_A_68	1ddw	A	MSESELENOMETHIONINE	D - 79
1eaq_A_63	1eaq	A	MSESELENOMETHIONINE	R - 64
1eaq_A_63	1eaq	A	MSESELENOMETHIONINE	P - 68
1eaq_A_63	1eaq	A	MSESELENOMETHIONINE	F - 70
1eaq_A_63	1eaq	A	MSESELENOMETHIONINE	L - 71
1eq9_A_39	1eq9	A	PMSBENZYLSULFINIC ACID	R - 41
1eq9_A_39	1eq9	A	PMSBENZYLSULFINIC ACID	C - 42
1fep_A_654	1fep	A	MSESELENOMETHIONINE	S - 660
1fep_A_654	1fep	A	MSESELENOMETHIONINE	A - 661
1fep_A_654	1fep	A	MSESELENOMETHIONINE	T - 662
1fep_A_654	1fep	A	MSESELENOMETHIONINE	L - 671
1fep_A_654	1fep	A	MSESELENOMETHIONINE	T - 672
1fep_A_654	1fep	A	MSESELENOMETHIONINE	G - 673
1fep_A_654	1fep	A	MSESELENOMETHIONINE	G - 674
1nsc_A_274	1nsc	A	SIAO-SIALIC ACID	E - 274
1nsc_A_274	1nsc	A	SIAO-SIALIC ACID	E - 275
1nsc_A_274	1nsc	A	NAGN-ACETYL-D-GLUCOSAMINE	F - 280
1nsc_A_274	1nsc	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 281
1nsc_A_274	1nsc	A	NAGN-ACETYL-D-GLUCOSAMINE	S - 282
1nsc_A_274	1nsc	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 283
1nsc_A_274	1nsc	A	SIAO-SIALIC ACID	R - 291
1nsc_A_274	1nsc	A	CACALCIUM ION	R - 291
1orv_A_60	1orv	A	NAGN-ACETYL-D-GLUCOSAMINE	E - 67
1orv_A_60	1orv	A	NAGN-ACETYL-D-GLUCOSAMINE	Q - 72
1p57_B_39	1p57	B	CR42-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL} BENZENOLATE	L - 41
1p57_B_39	1p57	B	CR42-{5-[AMINO(IMINIO)METHYL]-1H-BENZIMIDAZOL-2-YL} BENZENOLATE	C - 42
1sty_*_10	1sty	*	CACALCIUM ION	D - 19
1sty_*_10	1sty	*	PTPTHYMIDINE-3',5'-DIPHOSPHATE	D - 19
1sty_*_10	1sty	*	CACALCIUM ION	D - 21
1sty_*_10	1sty	*	PTPTHYMIDINE-3',5'-DIPHOSPHATE	D - 21
1sty_*_10	1sty	*	CACALCIUM ION	T - 22
1sty_*_10	1sty	*	PTPTHYMIDINE-3',5'-DIPHOSPHATE	T - 22
1vio_A_165	1vio	A	BU11,4-BUTANEDIOL	E - 167
1vio_A_165	1vio	A	BU11,4-BUTANEDIOL	L - 169
1vio_A_165	1vio	A	BU11,4-BUTANEDIOL	N - 175
1vio_A_165	1vio	A	BU11,4-BUTANEDIOL	I - 178

Clusters included in this Subclass

CLUSTER: HA.5.12

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