ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.30.1

Subclass Accession number: 686
Subclass: 4.30.1

Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates:

Consensus coordinates:

Conserved Annotation
EC : 1.1 (>75 %)  1.1.1 (>75 %)  1.1.1.37
GO : GO:0004457 (>75 %)  GO:0004459 (>75 %)  GO:0016614 (>75 %)  GO:0016615 (>50 %)  GO:0016616 (>75 %)  GO:0030060 (>50 %)
SCOP : 56326 (>75 %)  56327 (>75 %)  56328 (>75 %)

Number of loops: 3

Average sequence ID (%) : 53.1 +/- 3.3
Average RMSD (Å) : 0.267 +/- 0.058

Consensus geometry

d (Å): 3

delta (°): 135-180

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	hpGQYGhc
(φψ)-conformation:	pagplgbb

Pattern:	[AR]	[V]	[LM]	[P]	[CV]	[AG]	[AV]	[GY]	[LM]	[DET]	[G]	[Q]	[Y]	[G]	[IL]	[DN]	[DK]	[IT]	[FY]	[FIV]	[G]	[TV]	[P]	[AV]	[IK]	[IL]	[G]
Conservation:	-0.890	0.181	-0.234	1.741	-0.618	-0.651	-0.837	-0.898	-0.235	-0.975	1.221	0.701	1.741	1.221	-0.328	-0.051	-0.655	-0.997	0.629	-0.859	1.221	-0.737	1.741	-0.823	-1.506	-0.321	1.221

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ez4_A_268	1ez4	A	268	294	AVLPVGAYMDGQYGLNDIYIGTPAIIG	EEEEEEEEEESGGG-EEEEEEEEEEEE	xxbxbxbxxagpUvbblbxbxbwbxbb
1gv1_A_245	1gv1	A	245	271	RVLPCAVGLEGQYGIDKTFVGVPVKLG	EEEEEEEEEESGGG-EEEEEEEEEEEE	xxbxbxbxxagxvgxbvbxbxbwbxxb
1ur5_A_246	1ur5	A	246	272	RVMPVAAYLTGQYGLNDIYFGVPVILG	EEEEEEEEEESGGG-EEEEEEEEEEEE	xbbxbxbxxagxlvbblbbbxbwbbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ur5_A_246	1ur5	A	CDCADMIUM ION	R - 246

Clusters included in this Subclass