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Information on SUBCLASS 5.4.1
Subclass Accession number: 720
Subclass: 5.4.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 20

Average sequence ID (%) : 18.3 +/- 21.8
Average RMSD (Å) : 0.460 +/- 0.209

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: hphXcpXXX
(φψ)-conformation: bbpplbppb
Pattern: x[dhqrstw]x[dekpq][dgn][aegkqr][adegkrs]xxx[fikltv]
Conservation:-0.009-0.613-1.5350.4611.9990.584-0.360-0.507-0.695-0.5641.237
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aln_*_1461aln   -147156IHLPGREAHA.EE-TTS--EE.bbbpvbxxbx.
1b34_A_381b34   A4555MTLKNREPVQLEE-TTS--EEEbbxpvbpxbxb
1bue_A_2441bue   A250260VWPKNRAPLIIEE-TTS--EEEbbxxlbxxbbb
1cvr_A_4121cvr   A417427VVGYNKVTVIKEE-TTB--EEEbbbplbxxbbb
1dmh_A_2241dmh   A229239VSADGHRKLTTEE-TTB--EEEbbbpvbxxxbb
1dn0_B_341dn0   B3848RQPPGKGLEWIEE-TTS--EEEbbxpvbxxbxa
1fx7_A_2051fx7   A207217IVIPGHENVTLEE-TTS--EEEbbbpvbxpbxb
1m93_C_3181m93   C322332IRHVDGKILFVEE-TTS-EEEExbxxvbxxabb
1m98_A_2191m98   A225234LQPPFQKPIV.EE-TTS--EE.bbxplbxpxb.
1mju_H_341mju   H3848KQRPGQGLEWIEE-TTS-EEEEbbxpvbxxbxa
1mju_L_331mju   L3747LQRPGQSPQLLEE-TTS--EEEbbxpvbxwbxa
1nd4_A_351nd4   A3949LSAQGRPVLFVEE-TTS--EEEbbbpvbpxbbb
1nls_*_601nls   -6575VSYPNADSATVEE-TTS--EEEbbbpvbxxbbb
1oga_D_331oga   D3747RQEPGEGPVLLEE-TTS--EEEbbbpvbxpbxa
1oga_E_331oga   E3848RQDPGQGLRLIEE-TT--EEEEbbxpvbxxbxa
1omw_A_5871omw   A590600WRGEGEAPQSLEE-TTS---EEbbxxgbbwabb
1q2o_A_2931q2o   A295305LQAPDEAPELFEE-TTS--EEEbbxplbxxbxb
2f5b_H_352f5b   H4050RQPPGKALEWLEE-TTS--EEEbbxpvbxxbxa
2fbj_H_342fbj   H3848RQAPGKGLEWIEE-TTS-EEEEbbxpvbxxbxa
2shp_A_632shp   A6371YDLYGGEKF..EEETTS-EE..xbxxvbxxb..
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dmh_A_2241dmh   A     FEFE (III) ION H - 224
1dmh_A_2241dmh   A     MCT4-METHYLCATECHOL H - 224
1dmh_A_2241dmh   A     FEFE (III) ION H - 226
1dmh_A_2241dmh   A     MCT4-METHYLCATECHOL H - 226
1dmh_A_2241dmh   A     FEFE (III) ION Q - 240
1dmh_A_2241dmh   A     MCT4-METHYLCATECHOL Q - 240
1m98_A_2191m98   A     HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE L - 225
1m98_A_2191m98   A     HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE Q - 226
1m98_A_2191m98   A     HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE P - 227
1m98_A_2191m98   A     HEQ3-[18-(4-HYDROXY-2,6,6-TRIMETHYL-CYCLOHEX-1-ENYL)-3,7, 12,16-TETRAMETHYL-OCTADECA-1,3,5,7,9,11,13,15, 17-NONAENYL]-2,4,4-TRIMETHYL-CYCLOHEX-2-ENONE P - 228
1mju_L_331mju   L     GOLGLYCEROL Y - 34
1mju_L_331mju   L     GOLGLYCEROL L - 37
1mju_L_331mju   L     GOLGLYCEROL R - 39
1mju_L_331mju   L     GOLGLYCEROL Q - 45
1mju_L_331mju   L     GOLGLYCEROL L - 46
1mju_L_331mju   L     GOLGLYCEROL L - 47
1mju_L_331mju   L     GOLGLYCEROL Y - 49
1nd4_A_351nd4   A     ACTACETATE ION F - 48
2fbj_H_342fbj   H     NAGN-ACETYL-D-GLUCOSAMINE E - 50

Clusters included in this Subclass
CLUSTER: HA.5.33
CLUSTER: HA.6.13
CLUSTER: HA.7.7