ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 13.4.1

Subclass Accession number: 7688
Subclass: 13.4.1

Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 73.3 +/- -30.3
Average RMSD (Å) : 0.300 +/- 0.100

Consensus geometry

d (Å): 17

delta (°): 90-135

theta (°): 0-45

rho (°): 270-315

Consensus Sequence:	hVNppGcRFhpEhTTRD
(φψ)-conformation:	bbpaagbpNbpaappaa

Pattern:	[IV]	[LMV]	[V]	[N]	[KR]	[DE]	[G]	[KN]	[R]	[F]	[IMV]	[NS]	[E]	[IL]	[T]	[T]	[R]	[D]	[K]	[A]	[S]	[AD]	[A]	[I]	[L]
Conservation:	-0.535	-1.484	-0.131	1.493	-0.532	-0.352	1.493	-1.043	0.681	1.493	-1.304	-0.890	0.681	-0.940	0.681	0.681	0.681	1.493	0.681	-0.131	-0.131	-2.198	-0.131	-0.131	-0.131

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1d4d_A_385	1d4d	A	385	409	IVVNREGNRFMNEITTRDKASAAIL	EEE-TTS---S-TTS-HHHHHHHHH	bbbxaagbxNbxaaxxaaaaaaaaa
1e39_A_386	1e39	A	386	410	ILVNREGKRFVNEITTRDKASAAIL	EEE-TTS---S-TTS-HHHHHHHHH	bbbxaavbxNbxaaxxaaaaaaaaa
1qo8_A_381	1qo8	A	381	405	VMVNKDGNRFISELTTRDKASDAIL	EEE-TTS---S-TTS-HHHHHHHHH	bbbxaagbxNbxaaxxaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1d4d_A_385	1d4d	A	FADFLAVIN-ADENINE DINUCLEOTIDE	R - 401
1d4d_A_385	1d4d	A	SINSUCCINIC ACID	R - 401
1e39_A_386	1e39	A	FUMFUMARIC ACID	R - 402

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1e39_A_386	1e39	A	SBSSUBSTRATE BINDING SITE, HIS365ALA ENGINEERED MUTATION	R - 402

Clusters included in this Subclass