Information on SUBCLASS 0.1.8 |
Subclass Accession number: 8070
Subclass: 0.1.8 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 17 Average sequence ID (%) : 9.6 +/- 15.2 Average RMSD (Å) : 0.606 +/- 0.189 Consensus geometry
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Consensus Sequence: | XXXX |
(φψ)-conformation: | aabb |
Pattern: | [acgilmpvy] | [aegkqst] | [adegknqs] | [chnrty] | x | x |
Conservation: | -0.945 | 1.769 | 0.172 | 0.100 | -0.959 | -0.136 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1chm_A_396 | 1chm | A | 396 | 401 | PEKNII | HHHHEE | aaaaxx |
1dmr_*_262 | 1dmr | - | 265 | 270 | IANYTS | HHHHEE | aaaabb |
1dym_A_66 | 1dym | A | 69 | 74 | CAKNCI | HHHHEE | aaaabb |
1eu1_A_262 | 1eu1 | A | 265 | 270 | LENCTT | HHHHEE | aaaabb |
1f06_A_189 | 1f06 | A | 189 | 194 | GKQTHK | HHHHEE | aaaabb |
1g8k_A_325 | 1g8k | A | 328 | 333 | IEAHTK | HHHHEE | aaaabb |
1gpe_A_484 | 1gpe | A | 484 | 489 | MKEYFA | HHHHEE | aaaaxa |
1h5y_A_27 | 1h5y | A | 27 | 32 | QGIREV | HHHHEE | aaaaxa |
1htr_B_273 | 1htr | B | 273 | 278 | PSSYIL | HHHHEE | aaaabb |
1iat_A_238 | 1iat | A | 238 | 243 | VAKHFV | HHHHEE | aaaabb |
1ih7_A_788 | 1ih7 | A | 788 | 793 | IAKYDV | HHHHEE | aaaaxb |
1ivy_A_202 | 1ivy | A | 209 | 214 | QTHCCS | HHHHEE | aaaabb |
1j7n_A_33 | 1j7n | A | 40 | 45 | MKHIVK | HHHHEE | aaaabb |
1l9x_A_184 | 1l9x | A | 186 | 191 | LKKFFN | HHHHEE | aaaabx |
1q16_B_452 | 1q16 | B | 452 | 457 | YEDRFV | HHHHEE | aaaabb |
1tmo_*_268 | 1tmo | - | 271 | 276 | IQGYSL | HHHHEE | aaaabb |
1ygp_A_441 | 1ygp | A | 445 | 450 | AIVGSH | HHHHEE | aaaaba |
PDB ligands within a cut-off distance of 6 Å in this subclass |
Loop | PDB | Chain | Ligands | Residue |
1dym_A_66 | 1dym | A | 5HPPYROGLUTAMIC ACID | C - 69 |
1dym_A_66 | 1dym | A | 5HPPYROGLUTAMIC ACID | A - 70 |
1dym_A_66 | 1dym | A | 5HPPYROGLUTAMIC ACID | C - 73 |
1dym_A_66 | 1dym | A | 5HPPYROGLUTAMIC ACID | I - 74 |
1dym_A_66 | 1dym | A | 5HPPYROGLUTAMIC ACID | M - 75 |
1gpe_A_484 | 1gpe | A | MANALPHA-D-MANNOSE | F - 488 |
1gpe_A_484 | 1gpe | A | MANALPHA-D-MANNOSE | A - 489 |
1gpe_A_484 | 1gpe | A | NAGN-ACETYL-D-GLUCOSAMINE | G - 490 |
1gpe_A_484 | 1gpe | A | MANALPHA-D-MANNOSE | G - 490 |
1gpe_A_484 | 1gpe | A | NAGN-ACETYL-D-GLUCOSAMINE | E - 491 |
1gpe_A_484 | 1gpe | A | MANALPHA-D-MANNOSE | E - 491 |
1gpe_A_484 | 1gpe | A | NAGN-ACETYL-D-GLUCOSAMINE | T - 492 |
1gpe_A_484 | 1gpe | A | MANALPHA-D-MANNOSE | T - 492 |
1gpe_A_484 | 1gpe | A | NAGN-ACETYL-D-GLUCOSAMINE | L - 493 |
Clusters included in this Subclass |
CLUSTER: HE.0.5 |