Logo
Information on SUBCLASS 2.2.6
Subclass Accession number: 8205
Subclass: 2.2.6 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 25

Average sequence ID (%) : 17.1 +/- 17.1
Average RMSD (Å) : 0.576 +/- 0.224

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: XphpXh
(φψ)-conformation: aapabb
Pattern: x[adegknqs]x[afilmv][aegknqrst][adekq][acgkltv][DEHKR]x[acilmvy][fgilmvwy]x
Conservation:-1.2580.117-0.6111.041-0.5020.325-0.3472.188-1.1790.934-0.064-0.644
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a4i_A_2021a4i   A203214DEEVNKGDILVVHHHHTT-SEEEEaaaaaaxabbbb
1bg6_*_691bg6   -7081GLAVKDADVILIHHHHTT-SEEEEaaaaaaxabbbb
1brm_A_601brm   A6071LEALKALDIIVTHHHHHT-SEEEEaaaaaaxabbbb
1bx4_A_1531bx4   A156167WMLVEKARVCYIHHHHHH-SEEEEaaaaaaxabbbb
1dci_A_1731dci   A175186VDLISACDIRYCHHHHTTSSEEEEaaaaaaxabbbb
1fs5_A_1901fs5   A190201VGTLLDAEEVMIHHHHHTSS-EEEaaaaaaxabbbb
1gz0_A_2041gz0   A204215RLTREHCDELISHHHHHT-SEEEEaaaaaaxabbbb
1h0h_A_5261h0h   A530541REALTKLDWMVNHHHHTT-SEEEEaaaaaaxabbbb
1io2_A_461io2   A5465NEILGVLDDYVIHHHHTT-SEEEEaaaaaaxabbbb
1j6u_A_3591j6u   A361372AKALQLADEVVVHHHHTTSSEEEEaaaaaaxabbbb
1jjf_A_2131jjf   A213224KAAREKLKLLFIHHHHHH-SEEEEaaaaaaxabbbb
1kep_A_661kep   A7081DKLAAKADAIVHHHHHTT-SEEEEaaaaaababbbb
1kqf_A_5661kqf   A570581VSCLSKLKYMVVHHHHTT-SEEEEaaaaaaxabbbb
1l7d_A_2471l7d   A252263LKELVKTDIAITHHHHTT-SEEEEaaaaaaxabbbb
1l7d_A_611l7d   A6273AQALSQADVVWKHHHHSS-SEEEEaaaaaaxabbbb
1ml4_A_2161ml4   A216227EDVIGKLDVLYVHHHHTT-SEEEEaaaaaaxabbxx
1moq_*_2851moq   -286297DELLSKVEHIQIHHHHHH--EEEEaaaaaaxabbbb
1moq_*_4531moq   -458469AEDFSDKHHALFHHHHTT-SEEEEaaaaaaxabbbb
1oy5_A_981oy5   A101112VNELSKKERIMIHHHHHT-SEEEEaaaaaaxabbbb
1psd_A_441psd   A4859KESIRDAHFIGLHHHHTT-SEEEEaaaaaaxabbbb
1qpg_*_3151qpg   -322333AATVAKAKTIVWHHHHTT-SEEEEaaaaaaxabbbb
1tmo_*_4511tmo   -455466KQAFHKLECVVTHHHHTT-SEEEEaaaaaaxabbbb
1uqu_A_1691uqu   A173184LEQLCDYDLLGFHHHHTTSSEEEEaaaaaaxabbbb
1vpe_*_2981vpe   -305316KQKLSDAKTVVWHHHHTT-SEEEEaaaaaaxabbbb
3csu_C_2163csu   C216227EEVMAEVDILYMHHHHTT-SEEEEaaaaaaxabbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a4i_A_2021a4i   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 202
1a4i_A_2021a4i   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 214
1bx4_A_1531bx4   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED Y - 166
1dci_A_1731dci   A     EDO1,2-ETHANEDIOL A - 180
1dci_A_1731dci   A     EDO1,2-ETHANEDIOL C - 181
1dci_A_1731dci   A     EDO1,2-ETHANEDIOL D - 182
1dci_A_1731dci   A     EDO1,2-ETHANEDIOL I - 183
1dci_A_1731dci   A     EDO1,2-ETHANEDIOL R - 184
1gz0_A_2041gz0   A     MSESELENOMETHIONINE R - 204
1gz0_A_2041gz0   A     MSESELENOMETHIONINE L - 205
1gz0_A_2041gz0   A     MSESELENOMETHIONINE T - 206
1gz0_A_2041gz0   A     MSESELENOMETHIONINE R - 207
1gz0_A_2041gz0   A     MSESELENOMETHIONINE H - 209
1gz0_A_2041gz0   A     MSESELENOMETHIONINE C - 210
1gz0_A_2041gz0   A     MSESELENOMETHIONINE D - 211
1gz0_A_2041gz0   A     MSESELENOMETHIONINE E - 212
1gz0_A_2041gz0   A     MSESELENOMETHIONINE L - 213
1gz0_A_2041gz0   A     MSESELENOMETHIONINE I - 214
1h0h_A_5261h0h   A     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER V - 542
1h0h_A_5261h0h   A     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER N - 543
1kep_A_661kep   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE H - 81
1kqf_A_5661kqf   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE I - 582
1kqf_A_5661kqf   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE D - 583
1qpg_*_3151qpg   *     MAPMAGNESIUM-5'-ADENYLY-IMIDO-TRIPHOSPHATE N - 334
1tmo_*_4511tmo   *     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER V - 467
1tmo_*_4511tmo   *     2MDGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER D - 468
1vpe_*_2981vpe   *     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER N - 317

Clusters included in this Subclass
CLUSTER: HE.3.25
CLUSTER: HE.4.46
CLUSTER: HE.5.79