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Information on SUBCLASS 2.7.2
Subclass Accession number: 8272
Subclass: 2.7.2 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 16

Average sequence ID (%) : 7.9 +/- 12.5
Average RMSD (Å) : 0.712 +/- 0.154

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XpXXXX
(φψ)-conformation: aabpbb
Pattern: xxx[adeknqrst]x[ekpqrst][filtvwy]x
Conservation:-1.385-0.1420.0730.210-0.4382.168-0.253-0.233
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ckm_A_691ckm   A7178KLKQNKYVHHHHS-EEaaaaxxbb
1dmr_*_3011dmr   -310317LFESKRTMHHHHS-EEaaaabxbb
1ek6_A_701ek6   A7683LFKKYSFMHHHH--EEaaaabxba
1eu1_A_3011eu1   A310317SFVAGRTMHHHSS-EEaaaabxbb
1gz0_A_1451gz0   A145152AAESVPLIHHHHS-EEaaaabxbb
1h7b_A_841h7b   A8693GMLENGFKHHHHS-EEaaaaxbbx
1itk_A_3211itk   A325332NLLDYEWEHHHHS-EEaaaabxbb
1iw7_C_4901iw7   C490497EEDRYTIAHHHHS-EEaaaabxxb
1kwm_A_201kwm   A2936LASTTQIDHHHHS-EEaaaabxbb
1lwy_A_1521lwy   A163170CQAFGPRLHHHHS-EEaaaabxxa
1mla_*_2401mla   -249256RQLYNPVQHHHHS-EEaaaabpxx
1q16_A_9961q16   A9981005DIQAQPRKHHHHS-EEaaaabpbx
1sox_A_1671sox   A170177LRSRFPKHHHHHS-EEaaaabpxb
1tmo_*_3071tmo   -316323TLVKGRTQHHHHS-EEaaaabxbb
1udg_*_431udg   -5562RCQTEEVLHHHHS-EEaaaabxbb
1yal_*_1191yal   -124131ALANQPLSHHTTS-EEaaaabxbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ckm_A_691ckm   A     GTPGUANOSINE-5'-TRIPHOSPHATE S - 80
1ckm_A_691ckm   A     GTPGUANOSINE-5'-TRIPHOSPHATE E - 81
1ckm_A_691ckm   A     GTPGUANOSINE-5'-TRIPHOSPHATE K - 82
1ckm_A_691ckm   A     GTPGUANOSINE-5'-TRIPHOSPHATE T - 83
1dmr_*_3011dmr   *     PGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE A - 320
1dmr_*_3011dmr   *     OOXYGEN ATOM A - 320
1ek6_A_701ek6   A     TMATETRAMETHYLAMMONIUM ION M - 83
1ek6_A_701ek6   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE H - 87
1lwy_A_1521lwy   A     PEDPENTANE-3,4-DIOL-5-PHOSPHATE I - 152
1lwy_A_1521lwy   A     PEDPENTANE-3,4-DIOL-5-PHOSPHATE A - 153
1lwy_A_1521lwy   A     PEDPENTANE-3,4-DIOL-5-PHOSPHATE I - 155
1sox_A_1671sox   A     MTEPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7, 8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER L - 183
1sox_A_1671sox   A     MTEPHOSPHONIC ACIDMONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,7, 8A,9,10,10A-HEXAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL)ESTER Q - 184
1sox_A_1671sox   A     MOMOLYBDENUM ATOM Q - 184
1yal_*_1191yal   *     SCHS-METHYL THIOCYSTEINE GROUP T - 119
1yal_*_1191yal   *     SCHS-METHYL THIOCYSTEINE GROUP S - 120
1yal_*_1191yal   *     SCHS-METHYL THIOCYSTEINE GROUP F - 121
1yal_*_1191yal   *     SCHS-METHYL THIOCYSTEINE GROUP L - 122
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ckm_A_691ckm   A GPAACTIVE SITE LYSINE.K - 82

Clusters included in this Subclass
CLUSTER: HE.1.18
CLUSTER: HE.3.37