ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 1.5.1

Subclass Accession number: 8874
Subclass: 1.5.1

PSSM

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 15

Average sequence ID (%) : 16.2 +/- 18.1
Average RMSD (Å) : 0.300 +/- 0.100

Consensus geometry

d (Å): 5

delta (°): 90-135

theta (°): 45-90

rho (°): 90-135

Consensus Sequence:	XpGXh
(φψ)-conformation:	aagaa

Pattern:	x	x	x	[aeknqrt]	[degknst]	[gk]	x	x	[adekqrs]	x
Conservation:	-0.170	-0.350	-0.537	-0.030	0.050	2.777	-0.582	-0.501	-0.187	-0.469

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a8p_*_191	1a8p	-	193	202	DLMRSGKLFE	HHHHSSHHHH	aaaaavaaaa
1bh6_A_7	1bh6	A	7	16	GIPLIKADKV	HHHHTTHHHH	aaaaavaaaa
1brw_A_289	1brw	A	298	307	EAIRSGAAIA	HHHHHTHHHH	aaaaagaaaa
1c96_A_394	1c96	A	399	408	TIERDGYAQV	HHHHTTHHHH	aaaaavaaaa
1cr0_A_366	1cr0	A	371	380	EIIENGKFDQ	HHHHHTHHHH	aaaaavaaaa
1cse_E_7	1cse	E	7	16	GIPLIKADKV	HHHHHTHHHH	aaaaavaaaa
1ga6_A_138	1ga6	A	140	149	DANADGTLQA	HHHHTTHHHH	aaaaavaaaa
1ho8_A_437	1ho8	A	440	449	VLDKTGGKAD	HHHHHSHHHH	aaaaagaaaa
1j9a_A_63	1j9a	A	68	77	THSENGLIER	HHHHHTHHHH	aaaaagaaaa
1np3_A_268	1np3	A	279	288	KRIQDGEYAK	HHHHTTHHHH	aaaaavaaaa
1odz_A_385	1odz	A	386	395	ENINNGTLED	HHHHTSHHHH	aaaaavaaaa
1q7e_A_142	1q7e	A	145	154	AQAAGGAAST	HHHHTTHHHH	aaaaagaaaa
1qv9_A_147	1qv9	A	147	156	VLAATGVFRV	HHHHTTHHHH	aaaaavaaaa
1req_A_433	1req	A	435	444	KAIEKGIPKM	HHHHHTHHHH	aaaaavaaaa
1ril_*_72	1ril	-	76	85	KAFTEGWLEG	HHHHSSHHHH	aaaaavaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1j9a_A_63	1j9a	A	MSESELENOMETHIONINE	D - 63
1j9a_A_63	1j9a	A	MSESELENOMETHIONINE	W - 64
1j9a_A_63	1j9a	A	MSESELENOMETHIONINE	C - 65
1j9a_A_63	1j9a	A	MSESELENOMETHIONINE	Q - 66
1j9a_A_63	1j9a	A	MSESELENOMETHIONINE	H - 69
1j9a_A_63	1j9a	A	MSESELENOMETHIONINE	I - 75
1j9a_A_63	1j9a	A	MSESELENOMETHIONINE	I - 78
1q7e_A_142	1q7e	A	MSESELENOMETHIONINE	E - 142
1q7e_A_142	1q7e	A	MSESELENOMETHIONINE	N - 143
1q7e_A_142	1q7e	A	MSESELENOMETHIONINE	A - 145
1qv9_A_147	1qv9	A	MSESELENOMETHIONINE	V - 147
1qv9_A_147	1qv9	A	MSESELENOMETHIONINE	L - 148
1qv9_A_147	1qv9	A	MSESELENOMETHIONINE	A - 149
1qv9_A_147	1qv9	A	MSESELENOMETHIONINE	A - 150
1qv9_A_147	1qv9	A	MSESELENOMETHIONINE	T - 151
1qv9_A_147	1qv9	A	MSESELENOMETHIONINE	F - 154
1qv9_A_147	1qv9	A	MSESELENOMETHIONINE	V - 157
1qv9_A_147	1qv9	A	MSESELENOMETHIONINE	F - 161
1qv9_A_147	1qv9	A	MGMAGNESIUM ION	K - 167
1req_A_433	1req	A	B12COBALAMIN	K - 443
1req_A_433	1req	A	B12COBALAMIN	Q - 454
1req_A_433	1req	A	B12COBALAMIN	D - 458

Clusters included in this Subclass

CLUSTER: HH.1.105

CLUSTER: HH.1.29

CLUSTER: HH.2.40

CLUSTER: HH.3.162