ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 4.7.4

Subclass Accession number: 9049
Subclass: 4.7.4

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 3

Average sequence ID (%) : 21.3 +/- 20.5
Average RMSD (Å) : 0.833 +/- 0.231

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 135-180

rho (°): 315-360

Consensus Sequence:	XhXpXppp
(φψ)-conformation:	aabpbpaa

Pattern:	x	[FGY]	[E]	[IKM]	[AV]	[AV]	[EFK]	[GQ]	[FLT]	x	x	[AQ]	[AL]	[AQS]	[LY]	[EM]	[DE]	[HIL]	[ES]	[EQS]	[DEQ]	[AEL]	[AIL]	[E]	x
Conservation:	-1.103	-0.247	2.494	-0.675	0.269	0.269	-0.846	0.061	-0.589	-1.103	-0.526	0.017	-0.094	-0.247	0.259	-0.051	1.699	-0.675	0.426	0.182	0.695	-1.103	-0.332	2.494	-1.274

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1bvu_A_4	1bvu	A	5	29	PFEIAVKQLERAAQYMDISEEALEF	HHHHHHHHHHHHHTTS---HHHHHH	aaaaaaaaaaaaaaabxbpaaaaaa
1jq5_A_274	1jq5	A	274	298	HGEKVAFGTLVQLALEEHSQQEIER	HHHHHHHHHHHHHHHS---HHHHHH	aaaaaaaaaaaaaaaxbbxaaaaaa
2tmg_A_5	2tmg	A	5	29	LYEMAVEQFNRAASLMDLESDLAEV	HHHHHHHHHHHHHHHTT--HHHHHH	aaaaaaaaaaaaaaabxbpaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1jq5_A_274	1jq5	A	ZNZINC ION	H - 274
1jq5_A_274	1jq5	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	H - 274
1jq5_A_274	1jq5	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 275
1jq5_A_274	1jq5	A	ZNZINC ION	V - 278

Clusters included in this Subclass