ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 5.11.1

Subclass Accession number: 9115
Subclass: 5.11.1

PSSM

Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 8

Average sequence ID (%) : 26.8 +/- 24.9
Average RMSD (Å) : 0.487 +/- 0.259

Consensus geometry

d (Å): 13

delta (°): 90-135

theta (°): 90-135

rho (°): 315-360

Consensus Sequence:	hhXXXXpXp
(φψ)-conformation:	aallappaa

Pattern:	[DEQ]	x	[FHIM]	[fimv]	[ehmqy]	[d]	[ATV]	[LMTV]	[AGIK]	[AG]	[gs]	[ADQR]	x	x	[cgn]	[DET]	[epqr]	[dehkt]	[alv]	[AIVW]	[DEKRT]	[FHIMVY]
Conservation:	1.579	-1.286	0.018	-0.416	-0.372	1.746	1.069	0.451	-0.776	1.739	0.387	-0.580	-0.738	-1.501	-0.733	1.688	-0.770	-0.685	-0.844	0.053	0.182	-0.209

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1chu_A_60	1chu	A	64	85	DSHVEDTLIAGAGICDRHAVEF	HHHHHHHHHHTTT---HHHHHH	aaaaaaaaaaalgapxaaaaaa
1d4d_A_189	1d4d	A	189	210	QIMIDDTMKGGRNINDPELVKV	HHHHHHHHHHTTT-S-HHHHHH	aaaaaaaaaaavUapxaaaaaa
1e39_A_189	1e39	A	190	211	ELMFEDTMKGGQNINDPALVKV	HHHHHHHHHHTTT-S-HHHHHH	aaaaaaaaaaavlaxxaaaaaa
1kf6_A_62	1kf6	A	63	84	EYHFHDTVAGGDWLCEQDVVDY	HHHHHHHHHHTTT-S-HHHHHH	aaaaaaaaaaalvaxxaaaaaa
1m4i_A_18	1m4i	A	22	43	QDIRQMVTGAFAGDFTETDWEH	HHHHHHHHHHTTT---HHHHHH	aaaaaaaaaaalvabxaaaaaa
1nek_A_65	1nek	A	66	87	EWHMYDTVKGSDYIGDQDAIEY	HHHHHHHHHHHTS-S-HHHHHH	aaaaaaaaaaavlabxaaaaaa
1qla_A_66	1qla	A	67	88	DLHFMDTVKGSDWGCDQKVARM	HHHHHHHHHHTTT-S-HHHHHH	aaaaaaaaaaalvaxxaaaaaa
1qo8_A_184	1qo8	A	185	206	EWFIEDAMKGGRQQNDIKLVTI	HHHHHHHHHHTTT-S-HHHHHH	aaaaaaaaaaalvaxxaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1kf6_A_62	1kf6	A	1PEPENTAETHYLENE GLYCOL	A - 71
1kf6_A_62	1kf6	A	1PEPENTAETHYLENE GLYCOL	G - 72
1kf6_A_62	1kf6	A	1PEPENTAETHYLENE GLYCOL	G - 73
1kf6_A_62	1kf6	A	1PEPENTAETHYLENE GLYCOL	D - 74
1m4i_A_18	1m4i	A	COACOENZYME A	A - 31
1m4i_A_18	1m4i	A	COACOENZYME A	F - 32
1m4i_A_18	1m4i	A	KANKANAMYCIN A	F - 32
1m4i_A_18	1m4i	A	KANKANAMYCIN A	D - 35
1m4i_A_18	1m4i	A	KANKANAMYCIN A	F - 36
1m4i_A_18	1m4i	A	KANKANAMYCIN A	T - 37
1m4i_A_18	1m4i	A	KANKANAMYCIN A	D - 40
1m4i_A_18	1m4i	A	KANKANAMYCIN A	W - 41
1m4i_A_18	1m4i	A	KANKANAMYCIN A	H - 43

Clusters included in this Subclass

CLUSTER: HH.5.17