Logo
Information on SUBCLASS 6.8.1
Subclass Accession number: 9137
Subclass: 6.8.1 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 5

Average sequence ID (%) : 12.7 +/- 14.7
Average RMSD (Å) : 0.960 +/- 0.207

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XpphchppXp
(φψ)-conformation: aalppaapaa
Pattern: [ILV]xx[AEL][AFIM][AILV][cik]xx[ILPV][DKN][pv][AKNRT][dqs][EGPQ]x[ADE][CLV]x[deps][AFKL][almv]
Conservation:2.398-1.119-0.6940.1300.1471.146-1.3410.7770.9340.2401.240-0.200-0.282-0.448-0.053-0.5240.6391.282-1.273-1.084-0.885-1.030
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1cke_A_361cke   A4364LALAALHHHVDVASEDALVPLAHHHHHHHHT--TT-HHHHHHHHaaaaaaaavxxaaxaaaaaaaa
1l5o_A_2101l5o   A217238VRRAIAINQPNPRDGIDVLSKVHHHHHHHH---TT-HHHHHHHHaaaaaaaalxxaabaaaaaaaa
1one_A_721one   A7293IAPAFVKANIDVKDQKAVDDFLHHHHHHHHT--TT-HHHHHHHHaaaaaaaalxxaaxaaaaaaaa
1pdz_*_721pdz   -7293IVPEIIKSGLKVTQQKECDEFMHHHHHHHHT--TT-HHHHHHHHaaaaaaaavxxaabaaaaaaaa
4ubp_C_3114ubp   C316337LDMLMVCHHLKQNIPEDVAFADHHHHHHHHT--TTSHHHHHHHHaaaaaaaalxxaaxaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1l5o_A_2101l5o   A     NCNNICOTINATE MONONUCLEOTIDE K - 213
4ubp_C_3114ubp   C     HAEACETOHYDROXAMIC ACID H - 323
4ubp_C_3114ubp   C     HAEACETOHYDROXAMIC ACID R - 339

Clusters included in this Subclass
CLUSTER: HH.5.52