Package biana :: Package BianaParser :: Module biopaxLevel2Parser :: Class BiopaxLevel2Parser
[hide private]
[frames] | no frames]

Class BiopaxLevel2Parser

source code

Nested Classes [hide private]
Class to handle content in Biopax Level2 XML files
Class for parsing individual XML files obeying BIOPAX Level 2 standards
Instance Methods [hide private]
Starts the bianaParser Object
source code
Method to be overwritten by specific parsers
source code

Inherited from bianaParser.BianaParser: add_to_log, close, get_log_string, initialize_input_file_descriptor, parseArguments, print_help, start

Inherited from bianaParser.BianaParser (private): _indent, _splitsize

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Class Variables [hide private]
  name = 'biopax_level_2'
  description = 'This file implements a program that fills up ta...
  external_entity_definition = ''
  external_entity_relations = ''
Properties [hide private]

Inherited from object: __class__

Method Details [hide private]


source code 

Starts the bianaParser Object

Overrides: object.__init__
(inherited documentation)


source code 

Method to be overwritten by specific parsers

The method must include the calls to control lock and unlock database procedures

Overrides: bianaParser.BianaParser.parse_database

Class Variable Details [hide private]


'This file implements a program that fills up tables in database biana\
 with information of a BIOPAX Level 2 formatted database'