Package biana :: Package BianaParser :: Module biopaxLevel2Parser :: Class BiopaxPathwayStep

Class BiopaxPathwayStep

A step in a patwhay Multiple interactions may occur in a pathway step, each should be listed in the STEP-INTERACTIONS property.

Instance Methods

[hide private]

__init__(self, XMLNode)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature

source code

set_attributes(self, XMLNode)

source code

toBiana(self)
Add general attributes to external entity and adds it to the database

source code

add_participants_to_eEr(self, eEr)

source code

_get_biana_object(self)

source code

Inherited from BiopaxEntity (private): _entrez_funct, _identity, _reactome_funct

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Class Variables

[hide private]

Inherited from BiopaxEntity: controlled_relations, database, datatype_operations, datatype_to_biana_type, dbaccess, resources, x

Inherited from BiopaxEntity (private): _not_recognized

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, XMLNode)
(Constructor)

source code

x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Overrides: object.__init__: (inherited documentation)

set_attributes(self, XMLNode)

source code

Overrides: BiopaxEntity.set_attributes: (inherited documentation)

toBiana(self)

source code

Add general attributes to external entity and adds it to the database

returns the external entity id assigned to it

Overrides: BiopaxEntity.toBiana: (inherited documentation)

_get_biana_object(self)

source code

Overrides: BiopaxEntity._get_biana_object

Class BiopaxPathwayStep

__init__(self, XMLNode) (Constructor)

set_attributes(self, XMLNode)

toBiana(self)

_get_biana_object(self)

init(self, XMLNode)
(Constructor)