PDB: 1bdm Compound: Malate dehydrogenase mutant with thr 189 replaced Classification: OXIDOREDUCTASE(NAD(A)-CHOH(D)) Entry date in PDB: 1994-12-20 Resolution [Å]: 1.80 R-Factor: 0.169

CHAIN: A SWISS-PROT/TREMBL: P10584    KEYWORD: 3D-structure    NAD    Oxidoreductase    Tricarboxylic acid cycle    EC: 1.1.1.37 SCOP: c.2.1.5 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    LDH N-terminal domain-like    Malate dehydrogenase    Thermus flavus SCOP: d.162.1.1 Alpha and beta proteins (a+b)    LDH C-terminal domain-like    LDH C-terminal domain-like    Lactate & malate dehydrogenases, C-terminal domain    Malate dehydrogenase    Thermus flavus GO:  L-lactate dehydrogenase activity    malate dehydrogenase activity    oxidoreductase activity    glycolysis    malate metabolism    tricarboxylic acid cycle intermediate metabolism    CHAIN: B SWISS-PROT/TREMBL: P10584    KEYWORD: 3D-structure    NAD    Oxidoreductase    Tricarboxylic acid cycle    EC: 1.1.1.37 SCOP: c.2.1.5 Alpha and beta proteins (a/b)    NAD(P)-binding Rossmann-fold domains    NAD(P)-binding Rossmann-fold domains    LDH N-terminal domain-like    Malate dehydrogenase    Thermus flavus SCOP: d.162.1.1 Alpha and beta proteins (a+b)    LDH C-terminal domain-like    LDH C-terminal domain-like    Lactate & malate dehydrogenases, C-terminal domain    Malate dehydrogenase    Thermus flavus GO:  L-lactate dehydrogenase activity    malate dehydrogenase activity    oxidoreductase activity    glycolysis    malate metabolism    tricarboxylic acid cycle intermediate metabolism

Image Source: PDB

Loops in ArchDB-EC clusters

1bdm_A_208 - HH => SUBCLASS : 2.3.11

Loops not clustered in ArchDB

1bdm_A_177 - AR
1bdm_A_191 - AR
1bdm_A_295 - EH
1bdm_A_206 - EH
1bdm_A_151 - EH
1bdm_A_124 - EH
1bdm_A_82 - EH
1bdm_A_64 - EH
1bdm_A_35 - EH
1bdm_A_4 - EH
1bdm_A_266 - HA
1bdm_A_198 - HA
1bdm_A_181 - HA
1bdm_A_284 - HA
1bdm_A_14 - HE
1bdm_A_46 - HE
1bdm_A_73 - HE
1bdm_A_156 - HE
1bdm_A_132 - HE
1bdm_A_242 - HE
1bdm_A_102 - HE
1bdm_A_222 - HH
1bdm_A_215 - HH

1b8p A - percentage of sequence identity: 61
1b8u A - percentage of sequence identity: 61
1b8v A - percentage of sequence identity: 61
1bdm A - percentage of sequence identity: 100
1bdm B - percentage of sequence identity: 100
1bmd A - percentage of sequence identity: 99
1bmd B - percentage of sequence identity: 99
1iz9 A - percentage of sequence identity: 99
1iz9 B - percentage of sequence identity: 99
1y7t A - percentage of sequence identity: 99
1y7t B - percentage of sequence identity: 99
2cvq A - percentage of sequence identity: 99
2cvq B - percentage of sequence identity: 99