PDB: 1ooa Compound: nuclear factor nf-kappa-b p105 subunit Classification: TRANSCRIPTION/RNA Entry date in PDB: 2003-07-22 Resolution [Å]: 2.45 R-Factor: 0.208

CHAIN: A SWISS-PROT/TREMBL: P25799    KEYWORD: 3D-structure    Activator    Alternative splicing    ANK repeat    Apoptosis    DNA-binding    Nuclear protein    Phosphorylation    Repeat    Transcription regulation    3D-structure    Activator    Alternative splicing    ANK repeat    Apoptosis    DNA-binding    Nuclear protein    Phosphorylation    Repeat    Transcription regulation    SCOP: b.1.18.1 All beta proteins    Immunoglobulin-like beta-sandwich    E set domains    NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain    p50 subunit of NF-kappa B transcription factor    Mouse (Mus musculus) SCOP: b.2.5.3 All beta proteins    Common fold of diphtheria toxin/transcription factors/cytochrome f    p53-like transcription factors    Rel/Dorsal transcription factors, DNA-binding domain    p50 subunit of NF-kappa B (NFKB), N-terminal domain    Mouse (Mus musculus) GO:  nucleus    protein binding    transcription factor activity    regulation of transcription    regulation of transcription, DNA-dependent    signal transduction    CHAIN: B SWISS-PROT/TREMBL: P25799    KEYWORD: 3D-structure    Activator    Alternative splicing    ANK repeat    Apoptosis    DNA-binding    Nuclear protein    Phosphorylation    Repeat    Transcription regulation    3D-structure    Activator    Alternative splicing    ANK repeat    Apoptosis    DNA-binding    Nuclear protein    Phosphorylation    Repeat    Transcription regulation    SCOP: b.1.18.1 All beta proteins    Immunoglobulin-like beta-sandwich    E set domains    NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain    p50 subunit of NF-kappa B transcription factor    Mouse (Mus musculus) SCOP: b.2.5.3 All beta proteins    Common fold of diphtheria toxin/transcription factors/cytochrome f    p53-like transcription factors    Rel/Dorsal transcription factors, DNA-binding domain    p50 subunit of NF-kappa B (NFKB), N-terminal domain    Mouse (Mus musculus) GO:  nucleus    protein binding    transcription factor activity    regulation of transcription    regulation of transcription, DNA-dependent    signal transduction

Image Source: PDB

Loops in ArchDB95 clusters

1ooa_A_131 - AR => SUBCLASS : 2.6.2
1ooa_A_120 - AR => SUBCLASS : 5.2.1
1ooa_A_279 - HA => SUBCLASS : 5.17.1

Loops not clustered in ArchDB

1ooa_A_257 - AR
1ooa_A_291 - AR
1ooa_A_250 - AR
1ooa_A_232 - AR
1ooa_A_225 - AR
1ooa_A_308 - AR
1ooa_A_91 - AR
1ooa_A_81 - AR
1ooa_A_265 - AR
1ooa_A_137 - EH
1ooa_A_325 - HA
1ooa_A_41 - HA
1ooa_A_209 - HA
1ooa_A_116 - HA
1ooa_A_110 - HA
1ooa_A_188 - HE
1ooa_A_147 - HH
1ooa_A_165 - HH

1bfs - - percentage of sequence identity: 100
1ikn C - percentage of sequence identity: 100
1le5 B - percentage of sequence identity: 100
1le5 F - percentage of sequence identity: 100
1le9 B - percentage of sequence identity: 100
1le9 F - percentage of sequence identity: 100
1lei B - percentage of sequence identity: 100
1nfi B - percentage of sequence identity: 99
1nfi D - percentage of sequence identity: 99
1nfk A - percentage of sequence identity: 100
1nfk B - percentage of sequence identity: 100
1ooa A - percentage of sequence identity: 100
1ooa B - percentage of sequence identity: 100
1svc P - percentage of sequence identity: 97
1u36 A - percentage of sequence identity: 98
1u3j A - percentage of sequence identity: 99
1u3y A - percentage of sequence identity: 98
1u3z A - percentage of sequence identity: 98
1u41 A - percentage of sequence identity: 99
1u41 B - percentage of sequence identity: 99
1u41 C - percentage of sequence identity: 99
1u41 D - percentage of sequence identity: 99
1u42 A - percentage of sequence identity: 98
1vkx B - percentage of sequence identity: 100