ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.1.22

Subclass Accession number: 2771
Subclass: 2.1.22

PSSM

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 6

Average sequence ID (%) : 6.7 +/- 9.5
Average RMSD (Å) : 0.717 +/- 0.264

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	XhXphp
(φψ)-conformation:	bbabaa

Pattern:	[klmtv]	[tvw]	[ailv]	[adnrs]	[ENRST]	[ailp]	[dey]	[adek]	[hly]	[dkpr]	[alpvy]	[AFIMV]	[denqs]	x	[aest]	[ailm]
Conservation:	-0.450	0.049	1.119	-0.692	1.196	-0.974	1.526	-0.549	0.353	-0.693	-2.147	1.509	-0.086	-0.389	-0.321	0.550

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1dys_A_51	1dys	A	51	66	YWISNIFLLRDIDVAI	EEE-SSGGGHHHHHHH	xxbabaaaaaaaaaaa
1e4e_A_182	1e4e	A	182	197	KKVNSADELDYAIESA	EEE-SGGGHHHHHHHH	bxbabaaaaaaaaaaa
1oi4_A_171	1oi4	A	172	187	VTSRTPDDLPAFNREA	EEESSGGGHHHHHHHH	bbbabaaaaaaaaaaa
1pkx_A_143	1pkx	A	143	158	TVVCEPEDYVVVSTEM	EEE--GGGHHHHHHHH	xbbabaaaaaaaaaaa
1qjw_A_134	1qjw	A	134	149	MWLDTLDKTPLMEQTL	EEE-SGGGHHHHHHHH	xxxabaaaaaaaaaaa
1vi6_A_70	1vi6	A	72	87	LVAARQYAHKPVQMFS	EEE-SGGGHHHHHHHH	xbbapaaaaaaaaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1e4e_A_182	1e4e	A	GOLGLYCEROL	K - 183
1e4e_A_182	1e4e	A	GOLGLYCEROL	N - 185
1e4e_A_182	1e4e	A	GOLGLYCEROL	E - 195
1e4e_A_182	1e4e	A	GOLGLYCEROL	S - 196
1qjw_A_134	1qjw	A	GLCGLUCOSE	W - 135
1qjw_A_134	1qjw	A	GOLGLYCEROL	W - 135
1qjw_A_134	1qjw	A	GLCGLUCOSE	L - 136
1qjw_A_134	1qjw	A	GLCGLUCOSE	D - 137
1qjw_A_134	1qjw	A	GOLGLYCEROL	D - 137
1qjw_A_134	1qjw	A	GOLGLYCEROL	T - 138
1qjw_A_134	1qjw	A	GLCGLUCOSE	K - 141
1qjw_A_134	1qjw	A	GOLGLYCEROL	K - 141
1qjw_A_134	1qjw	A	CDCADMIUM ION	E - 146

Clusters included in this Subclass

CLUSTER: EH.4.141

CLUSTER: EH.6.58