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Information on SUBCLASS 1.4.1
Subclass Accession number: 2141
Subclass: 1.4.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 45

Average sequence ID (%) : 18.2 +/- 17.2
Average RMSD (Å) : 0.416 +/- 0.189

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 270-315
Consensus Sequence: XXGXp
(φψ)-conformation: aaeaa
Pattern: xxxx[GR]x[adegknqrst]x[afgltv]
Conservation:-0.458-0.339-0.437-0.3652.639-0.412-0.060-0.449-0.118
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8h_*_3081a8h   -312320LEKYGRDALHHHH-HHHHaaaaeaaaa
1aop_*_3071aop   -311319LERVGVETFHHHH-HHHHaaaaMaaaa
1b3u_A_2661b3u   A270278QKAVGPEITHHHH-HHHHaaaaeaaaa
1b63_A_2091b63   A213221GAICGTAFLHHHH-HHHHaaaaeaaaa
1cb6_A_16591cb6   A16601668EKYLGPQYVHHHH-HHHHeNaaeaaaa
1d3g_A_3571d3g   A359367LTFWGPPVVHHHH-THHHaaaaeaaaa
1d3v_A_2001d3v   A203211VDKLGIGKVHHHH-HHHHaaaaeaaaa
1e58_A_991e58   A103111AEKYGDEQVHHHH-HHHHaaaaeaaaa
1f14_A_2461f14   A250258LDYVGLDTTHHHH-HHHHaaaaMaaaa
1fs7_A_1371fs7   A142150IEQDGELEYHHHH-HHHHaaaaeaaaa
1geq_A_891geq   A92100IYRAGVRNFHHHH-HHHHaaaaMaaaa
1gk8_A_2691gk8   A269277YLTGGFTANHHHH-HHHHaaaaeaaaa
1h16_A_1821h16   A184192VALYGIDYLHHHH-HHHHaaaaeaaaa
1h7s_A_2231h7s   A228236GSVFGQKQLHHHH-HHHHaaaaeaaaa
1hl2_A_2291hl2   A246254LIKTGVFRGHHHH-HHHHaaaaeaaaa
1hnu_A_1611hnu   A166174PLKFGTNTTHHHH-HHHHaaaaeaaaa
1hzd_A_2201hzd   A225233PRAIGMSLAHHHH-HHHHaaaaeaaaa
1iat_A_2811iat   A284292ALHVGFDNFHHHH-HHHHaaaaeaaaa
1jil_A_2941jil   A305313KFIHGEDALHHHH-HHHHaaaaeaaaa
1l4u_A_451l4u   A4957FATDGEQEFHHHT-HHHHaaaaeaaaa
1m2r_A_2381m2r   A246254AKVLGTDGLHHHH-HHHHaaaaeaaaa
1m5w_A_2161m5w   A222230AVMTGLKDAHHHH-HHHHaaaaeaaaa
1n5u_A_61n5u   A1119FKDLGEENFHHHH-HHHHaaaaeaaaa
1nd4_A_2181nd4   A229237AEELGGEWAHHHH-HHHHaaaaeaaaa
1nh1_A_1841nh1   A195203RTELGAKALHHHH-HHHHaaaaMaaaa
1nnf_A_1401nnf   A150158SKMKGDKVAHHHH-HHHHaaaaeaaaa
1o82_A_511o82   A5967IKKKGKRAVHHHH-HHHHaaaaeaaaa
1o8u_A_1561o8u   A161169PHVLGSNRGHHHH-HHHHaaaaeaaaa
1pmi_*_1661pmi   -169177NEIIGQELVHHHH-HHHHaaaaeaaaa
1q4g_A_4131q4g   A414422LVDYGVEALHHHH-HHHHaaaaeaaaa
1q6o_A_361q6o   A3947CVGEGVRAVHHHH-THHHaaaaeaaaa
1q8h_A_271q8h   A3341ADHIGFQEAHHHH-HHHHaaaaeaaaa
1qe3_A_3241qe3   A332340EYLLGKPLAHHHH-HHHHaaaaeaaaa
1qmg_A_3591qmg   A364372ISTKGMLALHHHT-HHHHaaaaeaaaa
1qsa_A_5451qsa   A551559AYNAGPGRVHHHH-HHHHaaaaeaaaa
1ro2_A_1151ro2   A119127KAWIGESALHHHH-HHHHaaaaeaaaa
1rqj_A_2711rqj   A272280PALLGLEQAHHHH-HHHHaaaaeaaaa
1ryo_A_3111ryo   A312320KMYLGYEYVHHHH-HHHHaaaaeaaaa
1s68_A_1721s68   A179187VDHAGLVDAHHHH-HHHHaaaaeaaaa
1ujp_A_1001ujp   A103111VLAWGPERFHHHH-HHHHaaaaeaaaa
1vhn_A_2401vhn   A255263IKTKGERKAHHHH-HHHHaaaaeaaaa
1via_A_471via   A5159FEQKRENFFHHHH-HHHHaaaaeaaaa
1vj7_A_871vj7   A9199EFDFGKDVRHHHH-HHHHaaaaeaaaa
1xyz_A_6581xyz   A660668RNVIGQDYLHHHH-TTHHaaaaeaaaa
3thi_A_1943thi   A204212INMAGEKPSHHHH-HHHHaaaaeaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aop_*_3071aop   *     SRMSIROHEME K - 308
1d3g_A_3571d3g   A     FMNFLAVIN MONONUCLEOTIDE T - 357
1d3g_A_3571d3g   A     FMNFLAVIN MONONUCLEOTIDE A - 358
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID L - 359
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID T - 360
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID F - 361
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID G - 363
1d3g_A_3571d3g   A     BRE2-BIPHENYL-4-YL-6-FLUORO-3-METHYL-QUINOLINE-4-CARBOXYLIC ACID P - 364
1gk8_A_2691gk8   A     EGLETHYLENE GLYCOL Y - 269
1gk8_A_2691gk8   A     EGLETHYLENE GLYCOL L - 270
1gk8_A_2691gk8   A     EGLETHYLENE GLYCOL T - 271
1gk8_A_2691gk8   A     EGLETHYLENE GLYCOL G - 272
1gk8_A_2691gk8   A     EGLETHYLENE GLYCOL G - 273
1gk8_A_2691gk8   A     EGLETHYLENE GLYCOL F - 274
1gk8_A_2691gk8   A     HYP4-HYDROXYPROLINE A - 281
1gk8_A_2691gk8   A     SMCS-METHYLCYSTEINE Y - 283
1gk8_A_2691gk8   A     HYP4-HYDROXYPROLINE R - 285
1h16_A_1821h16   A     PG4TETRAETHYLENE GLYCOL D - 195
1h16_A_1821h16   A     PG4TETRAETHYLENE GLYCOL A - 198
1h16_A_1821h16   A     PG4TETRAETHYLENE GLYCOL Q - 199
1h16_A_1821h16   A     PG4TETRAETHYLENE GLYCOL F - 200
1hl2_A_2291hl2   A     3PY3-HYDROXYPYRUVIC ACID F - 252
1hnu_A_1611hnu   A     EDO1,2-ETHANEDIOL S - 164
1hnu_A_1611hnu   A     REOPERRHENATE L - 167
1hnu_A_1611hnu   A     EDO1,2-ETHANEDIOL L - 167
1hnu_A_1611hnu   A     REOPERRHENATE K - 168
1hnu_A_1611hnu   A     EDO1,2-ETHANEDIOL K - 168
1m5w_A_2161m5w   A     PO4PHOSPHATE ION H - 216
1m5w_A_2161m5w   A     PO4PHOSPHATE ION A - 217
1n5u_A_61n5u   A     MYRMYRISTIC ACID V - 7
1n5u_A_61n5u   A     MYRMYRISTIC ACID R - 10
1n5u_A_61n5u   A     MYRMYRISTIC ACID L - 14
1n5u_A_61n5u   A     MYRMYRISTIC ACID F - 19
1n5u_A_61n5u   A     MYRMYRISTIC ACID L - 22
1n5u_A_61n5u   A     MYRMYRISTIC ACID V - 23
1n5u_A_61n5u   A     MYRMYRISTIC ACID A - 26
1n5u_A_61n5u   A     MYRMYRISTIC ACID F - 27
1nd4_A_2181nd4   A     KANKANAMYCIN A L - 223
1nd4_A_2181nd4   A     KANKANAMYCIN A R - 226
1nd4_A_2181nd4   A     KANKANAMYCIN A D - 227
1nd4_A_2181nd4   A     KANKANAMYCIN A E - 230
1nd4_A_2181nd4   A     KANKANAMYCIN A E - 231
1nnf_A_1401nnf   A     EDT{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID G - 140
1nnf_A_1401nnf   A     EDT{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID A - 141
1nnf_A_1401nnf   A     EDT{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID F - 142
1q4g_A_4131q4g   A     NAGN-ACETYL-D-GLUCOSAMINE M - 413
1q4g_A_4131q4g   A     NAGN-ACETYL-D-GLUCOSAMINE L - 414
1q4g_A_4131q4g   A     NAGN-ACETYL-D-GLUCOSAMINE D - 416
1q4g_A_4131q4g   A     NAGN-ACETYL-D-GLUCOSAMINE Y - 417
1q6o_A_361q6o   A     MGMAGNESIUM ION T - 36
1q6o_A_361q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE T - 36
1q6o_A_361q6o   A     LG6L-GULURONIC ACID 6-PHOSPHATE I - 37
1q8h_A_271q8h   A     CGUGAMMA-CARBOXY-GLUTAMIC ACID P - 27
1q8h_A_271q8h   A     CGUGAMMA-CARBOXY-GLUTAMIC ACID C - 29
1q8h_A_271q8h   A     CACALCIUM ION C - 29
1q8h_A_271q8h   A     CGUGAMMA-CARBOXY-GLUTAMIC ACID D - 30
1q8h_A_271q8h   A     CACALCIUM ION D - 30
1q8h_A_271q8h   A     CGUGAMMA-CARBOXY-GLUTAMIC ACID A - 33
1q8h_A_271q8h   A     CACALCIUM ION A - 33
1q8h_A_271q8h   A     CACALCIUM ION D - 34
1q8h_A_271q8h   A     CGUGAMMA-CARBOXY-GLUTAMIC ACID F - 38
1qsa_A_5451qsa   A     GOLGLYCEROL R - 545
1qsa_A_5451qsa   A     GOLGLYCEROL A - 551
1qsa_A_5451qsa   A     GOLGLYCEROL Y - 552
1qsa_A_5451qsa   A     GOLGLYCEROL N - 553
1qsa_A_5451qsa   A     GOLGLYCEROL G - 555
1vhn_A_2401vhn   A     MSESELENOMETHIONINE T - 246
1vhn_A_2401vhn   A     MSESELENOMETHIONINE F - 247
1vhn_A_2401vhn   A     MSESELENOMETHIONINE E - 248
1vhn_A_2401vhn   A     MSESELENOMETHIONINE H - 250
1vhn_A_2401vhn   A     MSESELENOMETHIONINE L - 251
1vhn_A_2401vhn   A     MSESELENOMETHIONINE L - 254
1vhn_A_2401vhn   A     MSESELENOMETHIONINE K - 262
1vhn_A_2401vhn   A     MSESELENOMETHIONINE A - 263
1vhn_A_2401vhn   A     MSESELENOMETHIONINE V - 264
1vhn_A_2401vhn   A     MSESELENOMETHIONINE V - 265
1via_A_471via   A     MSESELENOMETHIONINE E - 61
1via_A_471via   A     MSESELENOMETHIONINE Q - 62
1via_A_471via   A     MSESELENOMETHIONINE E - 63
1via_A_471via   A     MSESELENOMETHIONINE Q - 64
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h16_A_1821h16   A PG1PG4 BINDING SITE FOR CHAIN AA - 198
1h16_A_1821h16   A PG1PG4 BINDING SITE FOR CHAIN AQ - 199
1o82_A_511o82   A AC3SO4 BINDING SITE FOR CHAIN DR - 65

Clusters included in this Subclass
CLUSTER: HH.0.11
CLUSTER: HH.0.15
CLUSTER: HH.1.11
CLUSTER: HH.2.13