Logo
Information on SUBCLASS 3.8.1
Subclass Accession number: 2342
Subclass: 3.8.1 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 21

Average sequence ID (%) : 15.5 +/- 16.7
Average RMSD (Å) : 0.448 +/- 0.227

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 315-360
Consensus Sequence: XXXccXX
(φψ)-conformation: aallpaa
Pattern: [acfilmvw][aflmvwy][ehkqrty]xx[adegknqrs][fgw][DHNS]x[adegkqrt][afiklv]xx
Conservation:-0.1550.325-0.137-0.744-0.5980.1040.8622.865-0.821-0.887-0.2380.097-0.674
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a5t_*_1841a5t   -190202ALRLSAGSPGAALHHHHTTT-HHHHHaaaaavvxaaaaa
1aua_*_551aua   -6173FLRARKFDVQLAKHHHHTTT-HHHHHaaaaaUvxaaaaa
1ccw_B_3631ccw   B383395MFELGKGDLAIGTHHHHTTT-HHHHHaaaaalgxaaaaa
1ci4_A_421ci4   A4860QFLVLKKDEDLFRHHHHTTT-HHHHHaaaaalUxaaaaa
1d9c_A_671d9c   A7890FQKFLNGSSEKLEHHHHSTT-HHHHHaaaaalvxaaaaa
1efu_B_191efu   B2537ALTEANGDIELAIHHHHTTT-HHHHHaaaaalvxaaaaa
1etx_A_501etx   A6678VMQYTRGNATRAAHHHHTTT-HHHHHaaaaalvxaaaaa
1g3k_A_501g3k   A6375KLEMHQGHLLKSAHHHHTTT-HHHHHaaaaalvxaaaaa
1hbn_B_1971hbn   B200212VVAATLKNTLQAAHHHHTTT-HHHHHaaaaavvxaaaaa
1j0h_A_4281j0h   A428440ILTVCGGDIRKVKHHHHTTT-HHHHHaaaaavvxaaaaa
1ji1_A_4761ji1   A476488FATRSGGDLWKTYHHHHTTT-HHHHHaaaaavvxaaaaa
1ji2_A_4251ji2   A425437FLTSCGGNEAKFRHHHHTTT-HHHHHaaaaalvxaaaaa
1jnr_A_3361jnr   A340352LAELAGGDKKKLKHHHHHTT-HHHHHaaaaalvxaaaaa
1mus_A_461mus   A4658ITISSEGSKAAQEHHHHTTT-HHHHHaaaaalvxaaaaa
1njf_A_2001njf   A206218LARAAEGSLRDALHHHHTTT-HHHHHaaaaalvbaaaaa
1o6u_A_351o6u   A4153WLRARSFDLQKSEHHHHTTT-HHHHHaaaaallxaaaaa
1oai_A_5821oai   A588600CLQDNNWDYTRSAHHHHTTT-HHHHHaaaaavlbaaaaa
1qsa_A_5231qsa   A537549VYQQFGNNRIFSSHHHHTTS-HHHHHaaaaavlbaaaaa
1r5l_A_491r5l   A5567FLRARDFDLDLAWHHHHTTT-HHHHHaaaaalvxaaaaa
1rzh_M_541rzh   M7486FWYQAGWNPAVFLHHHHTTT-HHHHHaaaaavlxaaaaa
1sbp_*_1311sbp   -144156ALHHNNNDQAKAEHHHHTTT-HHHHHaaaaalvxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aua_*_551aua   *     BOGB-OCTYLGLUCOSIDE R - 60
1aua_*_551aua   *     BOGB-OCTYLGLUCOSIDE R - 63
1aua_*_551aua   *     BOGB-OCTYLGLUCOSIDE A - 64
1aua_*_551aua   *     BOGB-OCTYLGLUCOSIDE K - 66
1ci4_A_421ci4   A     MSESELENOMETHIONINE A - 42
1ci4_A_421ci4   A     MSESELENOMETHIONINE Y - 43
1ci4_A_421ci4   A     MSESELENOMETHIONINE V - 44
1ci4_A_421ci4   A     MSESELENOMETHIONINE L - 46
1hbn_B_1971hbn   B     GOLGLYCEROL F - 224
1njf_A_2001njf   A     ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER L - 214
1njf_A_2001njf   A     ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER R - 215
1njf_A_2001njf   A     ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER L - 218
1o6u_A_351o6u   A     MSESELENOMETHIONINE R - 40
1o6u_A_351o6u   A     MSESELENOMETHIONINE W - 41
1o6u_A_351o6u   A     MSESELENOMETHIONINE L - 42
1o6u_A_351o6u   A     MSESELENOMETHIONINE A - 44
1o6u_A_351o6u   A     MSESELENOMETHIONINE R - 45
1o6u_A_351o6u   A     MSESELENOMETHIONINE Q - 50
1o6u_A_351o6u   A     MSESELENOMETHIONINE K - 51
1o6u_A_351o6u   A     MSESELENOMETHIONINE S - 52
1o6u_A_351o6u   A     MSESELENOMETHIONINE E - 53
1qsa_A_5231qsa   A     GOLGLYCEROL Y - 533
1qsa_A_5231qsa   A     GOLGLYCEROL R - 545
1qsa_A_5231qsa   A     GOLGLYCEROL A - 551
1qsa_A_5231qsa   A     GOLGLYCEROL Y - 552
1qsa_A_5231qsa   A     GOLGLYCEROL N - 553
1r5l_A_491r5l   A     VIV(2R)-2,5,7,8-TETRAMETHYL-2-[(4R,8R)-4,8,12-TRIMETHYLTRIDECYL]CHROMAN-6-OL W - 76
1rzh_M_541rzh   M     PO4PHOSPHATE ION S - 54
1rzh_M_541rzh   M     PO4PHOSPHATE ION L - 55
1rzh_M_541rzh   M     BPHBACTERIOPHEOPHYTIN A S - 59
1rzh_M_541rzh   M     BPHBACTERIOPHEOPHYTIN A L - 60
1rzh_M_541rzh   M     U10UBIQUINONE-10 L - 60
1rzh_M_541rzh   M     BPHBACTERIOPHEOPHYTIN A F - 61
1rzh_M_541rzh   M     BPHBACTERIOPHEOPHYTIN A S - 62
1rzh_M_541rzh   M     BPHBACTERIOPHEOPHYTIN A G - 63
1rzh_M_541rzh   M     BPHBACTERIOPHEOPHYTIN A L - 64
1rzh_M_541rzh   M     BCLBACTERIOCHLOROPHYLL A W - 66
1rzh_M_541rzh   M     BPHBACTERIOPHEOPHYTIN A W - 66
1rzh_M_541rzh   M     SPOSPHEROIDENE W - 66
1rzh_M_541rzh   M     BCLBACTERIOCHLOROPHYLL A F - 67
1rzh_M_541rzh   M     BPHBACTERIOPHEOPHYTIN A F - 67
1rzh_M_541rzh   M     SPOSPHEROIDENE F - 67
1rzh_M_541rzh   M     BPHBACTERIOPHEOPHYTIN A F - 68
1rzh_M_541rzh   M     SPOSPHEROIDENE F - 68
1rzh_M_541rzh   M     SPOSPHEROIDENE I - 70
1rzh_M_541rzh   M     SPOSPHEROIDENE G - 71
1rzh_M_541rzh   M     SPOSPHEROIDENE I - 72
1rzh_M_541rzh   M     BCLBACTERIOCHLOROPHYLL A F - 74
1rzh_M_541rzh   M     SPOSPHEROIDENE F - 74
1rzh_M_541rzh   M     SPOSPHEROIDENE W - 75
1rzh_M_541rzh   M     SPOSPHEROIDENE F - 85
1rzh_M_541rzh   M     GOLGLYCEROL L - 86
1rzh_M_541rzh   M     GOLGLYCEROL R - 87

Clusters included in this Subclass
CLUSTER: HH.3.175
CLUSTER: HH.3.176
CLUSTER: HH.3.48
CLUSTER: HH.5.145
CLUSTER: HH.5.18