Information on SUBCLASS 5.4.1 |
Subclass Accession number: 2445
Subclass: 5.4.1 Type: HH alpha-alpha DB: ArchDB40 Image coordinates: Consensus coordinates: Conserved Annotation GO : GO:0005524 (>75 %) GO:0016301 (>75 %) GO:0016772 (>75 %) GO:0030554 (>75 %) SCOP : 52539 (>75 %) 52540 (>75 %) |
Number of loops: 20 Average sequence ID (%) : 11.5 +/- 13.2 Average RMSD (Å) : 0.810 +/- 0.302 Consensus geometry
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Consensus Sequence: | hXpXpXpXX |
(φψ)-conformation: | aapaappaa |
Pattern: | [adeknqrst] | x | [acfiklmtv] | x | [ADEKNRST] | x | [adeknqst] | x | [dhknpst] | x | x | x | [acfiklv] |
Conservation: | -0.025 | -1.385 | 0.124 | -1.247 | 2.314 | -0.194 | 0.792 | 0.016 | 1.200 | -0.693 | -0.213 | 0.035 | -0.725 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1ak0_*_86 | 1ak0 | - | 95 | 107 | QRVSDSSLSSENH | HHHT-TTS-HHHH | aaaaxaaxxaaaa |
1eex_A_84 | 1eex | A | 89 | 101 | NMLCDPNVKRSEI | HHHH-TTS-HHHH | aaaaxaaxxaaaa |
1ezf_A_64 | 1ezf | A | 81 | 93 | TLEDDMTISVEKK | HHHH-TTS-HHHH | aaaaxaaxxaaaa |
1f2e_A_105 | 1f2e | A | 110 | 122 | VPLFAPATSDEAK | HHHH-SS--HHHH | aaaaxaapxaaaa |
1gnl_A_168 | 1gnl | A | 179 | 191 | AKTLDDSLSVADL | HHTT-TT--HHHH | aaaaxaaxxaaaa |
1gux_A_525 | 1gux | A | 535 | 547 | FIKAEGNLTREMI | HHHH-TT--HHHH | aaaabaaxxaaaa |
1h0o_A_202 | 1h0o | A | 213 | 225 | RWIGDKEATYGER | HHHH-SSS-HHHH | aaaaxaapxaaaa |
1hu3_A_958 | 1hu3 | A | 958 | 970 | KIVKERKTSSRIR | HHHHS-SS-HHHH | aaaaxaabpaaaa |
1jlr_A_43 | 1jlr | A | 50 | 62 | TIIRDKETPKEEF | HHHH-TT--HHHH | aaaaxaaxxaaaa |
1kxp_D_435 | 1kxp | D | 450 | 462 | SNCCSINSPPLYC | HHHSSTT--HHHH | aaaabaaxxaaaa |
1n1b_A_258 | 1n1b | A | 264 | 276 | AYARRPDMNPLIF | HHHH-TT--HHHH | aaaaxaapxaaaa |
1nh1_A_223 | 1nh1 | A | 235 | 247 | RQAISSDLSQAEL | HHHT-SS--HHHH | aaaaxaaxxaaaa |
1nm8_A_452 | 1nm8 | A | 459 | 471 | KAMDDSSVTEHQK | HHHT-TTS-HHHH | aaaaxaabxaaaa |
1nwc_A_188 | 1nwc | A | 189 | 201 | SELKDPASSILDI | HHHH-TTS-HHHH | aaaaxaaxxaaaa |
1o5o_A_10 | 1o5o | A | 17 | 29 | TIMRDKNTGPKEF | HHHHSTT--HHHH | aaaapaaxxaaaa |
1odo_A_161 | 1odo | A | 172 | 184 | DGVFDTTLDQAEA | HHHH-TT--HHHH | aaaaxaaxxaaaa |
1orj_A_1076 | 1orj | A | 1091 | 1103 | NTLVKVDKTKEEL | HHHH-TT--HHHH | aaaapaaxbaaaa |
1q06_A_60 | 1q06 | A | 68 | 80 | NLFNDPQRHSADV | HHHH-TT--HHHH | aaaaxaaxbaaaa |
1qgr_A_129 | 1qgr | A | 135 | 147 | ANVTNPNSTEHMK | HHHH-TT--HHHH | aaaaxaapxaaaa |
2pgd_*_212 | 2pgd | - | 221 | 233 | EWNKTELDSFLIE | HHTTTTT-BHHHH | aaaabaapbaaaa |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1h0o_A_202 | 1h0o | A | CO1CO BINDING SITE FOR CHAIN A | E - 233 |
Clusters included in this Subclass |
CLUSTER: HH.4.183 |
CLUSTER: HH.4.284 |
CLUSTER: HH.5.192 |
CLUSTER: HH.5.29 |
CLUSTER: HH.6.49 |
CLUSTER: HH.6.8 |
CLUSTER: HH.8.18 |