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Information on SUBCLASS 0.1.4
Subclass Accession number: 5191
Subclass: 0.1.4 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 33

Average sequence ID (%) : 8.5 +/- 13.2
Average RMSD (Å) : 0.582 +/- 0.172

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XXhX
(φψ)-conformation: aabb
Pattern: xxxx[afgilmy]xxx
Conservation:1.823-1.518-0.011-0.2810.427-0.311-0.128-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1c7g_A_4471c7g   A447454RFFTARFDHHHH-EEEaaaaxbbb
1dfo_A_1351dfo   A136143SGKLYNIVHHHHSEEEaaaabxxb
1dtd_A_4491dtd   A454461ILDALDIFHHHH-EEEaaaabxbb
1ek6_A_701ek6   A7683LFKKYSFMHHHH--EEaaaabxba
1eke_A_461eke   A5663LENLGYVEHHHHSEEEaaaabbbb
1fmj_A_991fmj   A99105MSLRYIY.HHHHSEE.aaaabxx.
1g61_A_20151g61   A20152021IGVLALT.HHHH-EE.aaaabbb.
1g61_A_20591g61   A20592065VGSLSVA.HHHH-EE.aaaabbb.
1g62_A_591g62   A5965IGRMTAG.HHHH-EE.aaaabbe.
1gc5_A_4041gc5   A413420LEKEFTEFHHHHSEEEaaaabxxa
1h16_A_5291h16   A538545AIKYAKVKHHHHSEEEaaaabbbb
1hdh_A_301hdh   A3542LAIAGLRLHHHHSEEEaaaaxbxb
1hup_*_901hup   -107114TFSLGKQVHHHTSEEEaaaabbbb
1j0h_A_5011j0h   A502509SLRRGEISHHHH-EEEaaaaxxbb
1ji1_A_5491ji1   A550557ALRTGSFMHHHHSEEEaaaaxxbb
1ji2_A_4981ji2   A499506SLTRGNVRHHHH-EEEaaaaxxbb
1kag_A_881kag   A94101LSARGVVVHHHHSEEEaaaabxxb
1khb_A_1641khb   A170176MRIMTRM.HHHHSEE.aaaabxb.
1kl1_A_1311kl1   A132139SGVQYNFVHHHHSEEEaaaabxxb
1kol_A_1441kol   A144150ADFNLLK.HHHH-EE.aaaaxbx.
1l5j_A_2481l5j   A254261LWFMGDDIHHHHSEEEaaaabbxb
1l9x_A_1841l9x   A186193LKKFFNVLHHHHEEEEaaaabxxa
1lst_*_751lst   -7783RQQEIAF.HHHH-EE.aaaabbb.
1m3q_A_1521m3q   A163170CQAFGPRLHHHHS-EEaaaaxxxa
1m4l_A_941m4l   A99106ILDSMDIFHHHH-EEEaaaabbbb
1n8q_A_3311n8q   A331338LKEIFRTDHHHHSEEEaaaabxbb
1ou0_A_871ou0   A8996VLERNRVVHHHH-EEEaaaabbbb
1p1j_A_1091p1j   A109116MTQCSTLKHHHH-EEEaaaabbbx
1p2z_A_4071p2z   A407413PDVRIIE.HHHHSEE.aaaabxb.
1pam_A_4021pam   A403410AIAYGSTHHHHH-EEEaaaaxxbb
1q0b_A_2311q0b   A231238YSSRSHSVHHHH-EEEaaaaxbbb
1qho_A_4031qho   A404411AIQYGTTTHHHH-EEEaaaaxxbb
1vhx_A_421vhx   A4855LIKDYTIDHHTTSEEEaaaabbxa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ek6_A_701ek6   A     TMATETRAMETHYLAMMONIUM ION M - 83
1ek6_A_701ek6   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE H - 87
1eke_A_461eke   A     MSESELENOMETHIONINE R - 65
1fmj_A_991fmj   A     RTLRETINOL Y - 105
1m3q_A_1521m3q   A     DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE I - 152
1m3q_A_1521m3q   A     ANG8-AMINOGUANINE I - 152
1m3q_A_1521m3q   A     DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE A - 153
1m3q_A_1521m3q   A     DRZ3',4'-DIHYDROXY-PENTANAL-5'-PHOSPHATE I - 155
1m3q_A_1521m3q   A     ANG8-AMINOGUANINE I - 155
1q0b_A_2311q0b   A     MGMAGNESIUM ION S - 232
1q0b_A_2311q0b   A     ADPADENOSINE-5'-DIPHOSPHATE S - 232
1q0b_A_2311q0b   A     ADPADENOSINE-5'-DIPHOSPHATE S - 233
1q0b_A_2311q0b   A     NATETHYL 4-(3-HYDROXYPHENYL)-6-METHYL-2-THIOXO-1,2,3,4-TETRAHYDROPYRIMIDINE-5-CARBOXYLATE F - 239
1qho_A_4031qho   A     MALMALTOSE Q - 412
1qho_A_4031qho   A     MALMALTOSE R - 413
1qho_A_4031qho   A     MALMALTOSE W - 414
1qho_A_4031qho   A     MALMALTOSE I - 415

Clusters included in this Subclass
CLUSTER: HE.0.3
CLUSTER: HE.1.27
CLUSTER: HE.2.16