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Information on SUBCLASS 3.1.1
Subclass Accession number: 6683
Subclass: 3.1.1 PSSM
Type: AR beta-beta link
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 53

Average sequence ID (%) : 11.9 +/- 14.8
Average RMSD (Å) : 0.598 +/- 0.228

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXXXXXh
(φψ)-conformation: bbpgpbb
Pattern: xxxx[adegnqrst]xx[afiklmtv]x
Conservation:-0.6400.048-1.154-0.4962.232-0.3860.2550.705-0.565
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aoz_A_2541aoz   A255263DIYSGESYSEE-TT-EEExbbpgxbbb
1aoz_A_361aoz   A3745RANAGDSVVEEETT-EEEbbbxgxxbb
1aoz_A_4451aoz   A447455WHLHGHDFWEEETT--EEbbbxvbbbx
1ar1_B_1621ar1   B163171VVPVGKKVLEEETTS-EEbbxpvbxxb
1bf2_*_7281bf2   -730738IGGAGTTYGEESTT-EEEaebpgpbbx
1bhe_*_2041bhe   -204212IDPMSSKNIEEEES-EEEbbwblbblb
1bn8_A_1861bn8   A186194ITINGGTHIEEEES-EEEbbxbvxblb
1c25_*_3941c25   -394400.HIKGAVN..EETT-EE..bppvxbx.
1czf_A_901czf   A92100MSGEHITVTEEEES-EEEbbeblxbbb
1dun_*_271dun   -2836MIPVSDTKIEE-TT-EEEbbxxvxbbb
1eyq_A_1431eyq   A143151NFPPGASVFEE-TT-EEEbbxpgxbbb
1f7d_A_261f7d   A2735HLLPGEVKVEE-TT-EEEbbxpvxbbx
1fi2_A_731fi2   A7886DFAPGGTNPEE-TT-EEEbbxpvxbxx
1fwx_A_5021fwx   A504512TVKEGDEVTEEETT-EEEbbbpvxxxb
1fwx_A_5351fwx   A538546EIGPQMTSSEE-TT-EEExbxpvxbbb
1g19_A_571g19   A5764.LPRGRVIE.EETTSEEE.xxxvbbbb
1gof_*_5531gof   -553561SVKVGGRITEEETT-EEEbbxpvxbbb
1gyc_A_2091gyc   A211219FSIDGHNLTEEETT--EEbbbpvbxbb
1gyc_A_2361gyc   A237245QIFAAQRYSEE-TT-EEExbxpvxbbb
1h2k_A_1861h2k   A189197IGMEGNVTPEE-TT-EEEbbxpvxbbx
1hg8_A_881hg8   A9098ISGSNITITEEEES-EEEbbeblxbbb
1hn0_A_741hn0   A7886KWKGGSSFTEEETT-EEExbbpvxbbb
1hv9_A_2601hv9   A267274THGRDVEI.EE-SS-EE.bbbxlxbb.
1hv9_A_2731hv9   A273281EIDTNVIIEEE-TTEEEEbbxxlxbbb
1hv9_A_2781hv9   A285292TLGHRVKI.EE-TT-EE.bbxxlxbb.
1ih7_A_2591ih7   A263271ITLFGISVLEEETT-EEExxbpvbbxb
1j9q_A_2331j9q   A234242TAAVGEKVLEEETT-EEEbbbpvxxbb
1j9q_A_731j9q   A7482VVHQDDYLEEEETT-EEEbbbpvxbbb
1jta_A_2441jta   A244251.RVRYGSIH.EESS-EEE.bbbgxbbb
1jva_A_2851jva   A285292.FAKGTNVL.EETT-EEE.bxxvpxbx
1kcw_*_9541kcw   -954962TMHVGDEVNEEETT-EEEbbbxgpbbb
1kcw_*_9961kcw   -9981006DIFPGTYQTEE-TT-EEExbbpvxbbb
1m56_B_1981m56   B199207VVPVNKTVVEEETT-EEExbxpvbxbb
1mq7_A_351mq7   A3644ELAPGRRALEE-TT-EEEbxxpvxbbx
1nif_*_2331nif   -234242TAAVGERVLEEETT-EEEbbbpgxxbb
1nif_*_721nif   -7482VVHENDYVEEEETT-EEEbbbpvxbxb
1noy_A_2581noy   A260267YSIDGVSI.EEETTSEE.bbbxgbxx.
1ocx_A_741ocx   A7582FLGNNFFA.EE-SSEEE.bbxplxbb.
1or8_A_2961or8   A306314TVKTGEEIFEE-TT-EEEbbbpgxbxb
1pmi_*_2661pmi   -270278GLNKGEAMFEE-TT-EEEbbxxvxbbb
1pmi_*_4031pmi   -404412KIDTGYVFFEEETT-EEExbxpvxbbx
1qb0_A_4361qb0   A436442.HIKTAVN..EETT-EE..bxpvxbx.
1qcs_A_1291qcs   A129137AFSVGQQLVEEETT-EEExbbxvxbbb
1qq1_A_1771qq1   A183191KLGKGSRIAEE-TT-EEElxxpgxbbb
1qq4_A_21qq4   A210NIVGGIEYSEEEET-EEExxbxvxxbb
1qre_A_1141qre   A114122SLAHQSQVHEE-TT-EEEbbxpvxbbb
1qre_A_1321qre   A132140FIGMQAFVFEE-TT-EEExbxpvxbbb
1qre_A_1491qre   A149157VLEPRSAAIEE-TT-EEEbbxpvxbbb
1qre_A_1551qre   A155161.AAIGVTI..EEES-EE..bbbvbbx.
1rhs_*_2031rhs   -203209.HIRGSVN..EETT-EE..bxpvxbb.
1uok_*_5441uok   -546554TLRPYEAMVEE-TT-EEExxxpUxbbb
2cua_A_952cua   A96104EVPQGAEIVEEETTSEEEbbxxvxxbb
2occ_B_1422occ   B143151VLPMEMTIREEETTS-EExbxxlbxbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aoz_A_361aoz   A     NAGN-ACETYL-D-GLUCOSAMINE V - 45
1aoz_A_2541aoz   A     CUCOPPER (II) ION G - 259
1aoz_A_2541aoz   A     C2OCU-O-CU LINKAGE G - 259
1aoz_A_4451aoz   A     CUCOPPER (II) ION H - 445
1aoz_A_4451aoz   A     CUCOPPER (II) ION P - 446
1aoz_A_4451aoz   A     CUCOPPER (II) ION W - 447
1aoz_A_4451aoz   A     CUCOPPER (II) ION H - 448
1aoz_A_4451aoz   A     C2OCU-O-CU LINKAGE H - 448
1aoz_A_4451aoz   A     C1OCU-O LINKAGE H - 448
1aoz_A_4451aoz   A     CUCOPPER (II) ION L - 449
1aoz_A_4451aoz   A     C1OCU-O LINKAGE L - 449
1aoz_A_4451aoz   A     CUCOPPER (II) ION H - 450
1aoz_A_4451aoz   A     C2OCU-O-CU LINKAGE H - 450
1aoz_A_4451aoz   A     C1OCU-O LINKAGE H - 450
1aoz_A_4451aoz   A     CUCOPPER (II) ION G - 451
1aoz_A_4451aoz   A     C1OCU-O LINKAGE G - 451
1bn8_A_1861bn8   A     CACALCIUM ION T - 187
1czf_A_901czf   A     ZNZINC ION E - 95
1czf_A_901czf   A     ZNZINC ION H - 96
1eyq_A_1431eyq   A     NARNARINGENIN Y - 152
1fi2_A_731fi2   A     MNMANGANESE (II) ION N - 85
1fi2_A_731fi2   A     MNMANGANESE (II) ION H - 88
1gyc_A_2091gyc   A     NAGN-ACETYL-D-GLUCOSAMINE G - 215
1gyc_A_2091gyc   A     NAGN-ACETYL-D-GLUCOSAMINE H - 216
1gyc_A_2091gyc   A     NAGN-ACETYL-D-GLUCOSAMINE N - 217
1gyc_A_2091gyc   A     NAGN-ACETYL-D-GLUCOSAMINE T - 219
1gyc_A_2361gyc   A     CUCOPPER (II) ION A - 241
1gyc_A_2361gyc   A     NAGN-ACETYL-D-GLUCOSAMINE N - 249
1h2k_A_1861h2k   A     OGAN-OXALYOLGLYCINE L - 186
1h2k_A_1861h2k   A     OGAN-OXALYOLGLYCINE L - 188
1h2k_A_1861h2k   A     OGAN-OXALYOLGLYCINE V - 195
1h2k_A_1861h2k   A     FE2FE (II) ION T - 196
1h2k_A_1861h2k   A     OGAN-OXALYOLGLYCINE T - 196
1h2k_A_1861h2k   A     FE2FE (II) ION H - 199
1h2k_A_1861h2k   A     OGAN-OXALYOLGLYCINE H - 199
1hg8_A_881hg8   A     NAGN-ACETYL-D-GLUCOSAMINE S - 93
1hg8_A_881hg8   A     NAGN-ACETYL-D-GLUCOSAMINE N - 94
1hg8_A_881hg8   A     NAGN-ACETYL-D-GLUCOSAMINE T - 96
1ocx_A_741ocx   A     PBMTRIMETHYL LEAD ION F - 81
1or8_A_2961or8   A     UNKUNKNOWN V - 298
1or8_A_2961or8   A     UNKUNKNOWN Y - 300
1or8_A_2961or8   A     GOLGLYCEROL G - 310
1or8_A_2961or8   A     GOLGLYCEROL E - 311
1or8_A_2961or8   A     GOLGLYCEROL E - 312
1or8_A_2961or8   A     GOLGLYCEROL I - 313
1or8_A_2961or8   A     GOLGLYCEROL F - 314
1pmi_*_2661pmi   *     ZNZINC ION L - 279
1qcs_A_1291qcs   A     MSESELENOMETHIONINE F - 130
1qcs_A_1291qcs   A     MSESELENOMETHIONINE F - 138
1qcs_A_1291qcs   A     MSESELENOMETHIONINE F - 140
1qre_A_1141qre   A     OCNCOBALT ION, 2 WATERS COORDINATED Q - 120
1qre_A_1141qre   A     BCTBICARBONATE ION H - 122
1qre_A_1141qre   A     OCNCOBALT ION, 2 WATERS COORDINATED H - 122
1qre_A_1141qre   A     OCNCOBALT ION, 2 WATERS COORDINATED G - 123
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gyc_A_2091gyc   A NA3NAG BINDING SITE FOR CHAIN AG - 215
1gyc_A_2091gyc   A NA3NAG BINDING SITE FOR CHAIN AN - 217
1gyc_A_2361gyc   A NA4NAG BINDING SITE FOR CHAIN AN - 249
1h2k_A_1861h2k   A SO2SO4 BINDING SITE FOR CHAIN AE - 192
1h2k_A_1861h2k   A SO2SO4 BINDING SITE FOR CHAIN AG - 193
1h2k_A_1861h2k   A FE1FE BINDING SITE FOR CHAIN AH - 199
1ocx_A_741ocx   A AC4PBM BINDING SITE FOR CHAIN BF - 81

Clusters included in this Subclass
CLUSTER: AR.1.40
CLUSTER: AR.2.79
CLUSTER: AR.2.9
CLUSTER: AR.3.5
CLUSTER: AR.3.64
CLUSTER: AR.3.73
CLUSTER: AR.4.27
CLUSTER: AR.4.3
CLUSTER: AR.4.51
CLUSTER: AR.5.64