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Information on SUBCLASS 5.1.1
Subclass Accession number: 8548
Subclass: 5.1.1 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 34

Average sequence ID (%) : 19.2 +/- 19.0
Average RMSD (Å) : 0.859 +/- 0.318

Consensus geometry
d (Å): 11 delta (°): 45-90 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: XXhpXGpXh
(φψ)-conformation: aapbpgpbb
Pattern: [afgilptv]x[aeknqrst]x[acilmtv][dehknpqrst][adenpqst][DGN][adegnqrs]x[afilmptv][agilpvy]x
Conservation:-0.581-0.660-0.353-0.9840.298-0.0910.0902.8550.470-0.9490.4330.199-0.726
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a3w_A_1331a3w   A133145ITKVISAGRIIYVHHHH--TT-EEEEaaaaxbpgxxbxb
1a8h_*_3171a8h   -324335LLREIPYGQDTP.HHHHS-TTS-EE.aaaabxxgbxbx.
1az9_*_51az9   -1527LVEQMQPGSAALIHHHTS-SSEEEEEaaaaxxxvbbbbb
1b5p_A_991b5p   A108120FQAILDPGDEVIVHHHH--TT-EEEEaaaabbpgxbbxb
1boo_A_2531boo   A259271IRMLTEPDDLVVDHHHH--TT-EEEEaaaabbpvxxbbb
1bt4_A_761bt4   A8597PMNFLKEGQTANYHHHH--TT-EEEEaaaaxbxgbbxxb
1bw0_A_1121bw0   A121133ITAICDAGDYALVHHHH--TT-EEEEaaaabbpgxbbxb
1c4k_A_1971c4k   A206218TSALVSNGDLVLFHHHH--TT-EEEEaaaaxbpgxxbxx
1c7g_A_991c7g   A107119SQLAIKPGQYVAGHHHH--TTEEEEEaaaabbpvxbbbb
1cl1_A_861cl1   A94106ILAFIEQGDHVLMHHHH--TT-EEEEaaaaxbpvxbbbb
1cs1_A_761cs1   A8496TTVFLKPGDLLVAHHHH--TT-EEEEaaaabbpgxbbbb
1d2f_A_961d2f   A104116IRQWSETGEGVVIHHHSS-TT-EEEEaaaabbpgxbbxb
1dfo_A_981dfo   A106118YTALLEPGDTVLGHHHH--TT-EEEEaaaabbpvxxbbb
1dxy_*_2171dxy   -219231AFNLMKPGAIVINHHHHS-TTEEEEEaaaapxxvxbbbb
1e0t_A_1131e0t   A113125FTTDLSVGNTVLVHHHH--TT-EEEEaaaaxbpgpbbbx
1g60_A_1991g60   A206218IRASSNPNDLVLDHHHH--TT-EEEEaaaabbpvxbbbb
1gc0_A_891gc0   A97109LWTLLRPGDEVLLHHHH--TT-EEEEaaaabbpgxbbxb
1gu7_A_2771gu7   A283295IARKLNNNGLMLTHHHTS-TT-EEEEaaaaxxpvxbbbx
1iay_A_1261iay   A135147IFCLADPGDAFLVHHHH--TT-EEEEaaaabxpgxbbxb
1isp_A_1381isp   A138150NYLSRLDGARNVQHHHH--BTSEEEEaaaaxbxgxxxbx
1j4a_A_2191j4a   A221233SIAKMKQDVVIVNHHHHS-TTEEEEEaaaaxxpvxbbbb
1jf9_A_941jf9   A106118GNSNVRAGDNIIIHHHH--TT-EEEEaaaabbpvxbbbb
1jgt_A_2191jgt   A234246VAQRVTPGDTPLVHHHHS-TT---EEaaaabxpgxxxbb
1liu_A_2071liu   A207219IVRVVPVGGRIYIHHHHS-TT-EEEEaaaaxxpvxbbxb
1m7y_A_1191m7y   A128140IFCLADPGEAVLIHHHH--TT-EEEEaaaabxpvxbbxb
1n8p_A_791n8p   A8698ILQSLPQGSHAVSHHHTS-SS-EEEEaaaaxxpvbbbbb
1o4s_A_971o4s   A106118FMALLDPGDEVIVHHHH--TT-EEEEaaaaxxpvxbbxb
1pkl_A_1311pkl   A131143LSKVVRPGNYIYIHHHH--TT-EEEEaaaaxbxgxbbxb
1poi_A_71poi   A1123IAKYVHSGDHIALHHHH--TT-EEEEaaaabbxgpxbbb
1psd_A_2231psd   A225237EISLMKPGSLLINHHHHS-TTEEEEEaaaaxpxvxbbbb
1qmg_A_2021qmg   A212224VFSHMKPNSILGLHHHHS-TT-EEEEaaaaxxxvxbxbb
1rfs_*_651rfs   -6880WLKTHAPGDRTLTHHHHS-TT-EEEEaaaabxpvxbbxb
1ufk_A_1051ufk   A114126LARHLRPGDKVLDHHHH--TT-EEEEaaaaxbpvxxbbb
1zym_A_2081zym   A208220VTSQVKNDDYLILHHHH--TT-EEEEaaaabbpvxxbbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b5p_A_991b5p   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 99
1b5p_A_991b5p   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 100
1b5p_A_991b5p   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 101
1b5p_A_991b5p   A     PLPPYRIDOXAL-5'-PHOSPHATE Q - 102
1b5p_A_991b5p   A     PLPPYRIDOXAL-5'-PHOSPHATE L - 104
1boo_A_2531boo   A     SAHS-ADENOSYL-L-HOMOCYSTEINE D - 271
1bt4_A_761bt4   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 76
1bt4_A_761bt4   A     PLPPYRIDOXAL-5'-PHOSPHATE A - 77
1bt4_A_761bt4   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 78
1bt4_A_761bt4   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 79
1bt4_A_761bt4   A     PLPPYRIDOXAL-5'-PHOSPHATE F - 81
1bw0_A_1121bw0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) G - 112
1bw0_A_1121bw0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) G - 113
1bw0_A_1121bw0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) S - 114
1bw0_A_1121bw0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) H - 115
1bw0_A_1121bw0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) I - 117
1c4k_A_1971c4k   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 197
1c4k_A_1971c4k   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 198
1c4k_A_1971c4k   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 199
1c4k_A_1971c4k   A     PLPPYRIDOXAL-5'-PHOSPHATE N - 200
1c4k_A_1971c4k   A     PLPPYRIDOXAL-5'-PHOSPHATE N - 202
1c7g_A_991c7g   A     PLPPYRIDOXAL-5'-PHOSPHATE R - 100
1c7g_A_991c7g   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 101
1c7g_A_991c7g   A     PLPPYRIDOXAL-5'-PHOSPHATE E - 103
1cl1_A_861cl1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) G - 86
1cl1_A_861cl1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) A - 87
1cl1_A_861cl1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) A - 88
1cl1_A_861cl1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) A - 89
1cl1_A_861cl1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) V - 90
1cs1_A_761cs1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) G - 76
1cs1_A_761cs1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) M - 77
1cs1_A_761cs1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) S - 78
1cs1_A_761cs1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) I - 80
1d2f_A_961d2f   A     PLPPYRIDOXAL-5'-PHOSPHATE V - 96
1d2f_A_961d2f   A     PLPPYRIDOXAL-5'-PHOSPHATE I - 97
1d2f_A_961d2f   A     PLPPYRIDOXAL-5'-PHOSPHATE Y - 98
1dfo_A_981dfo   A     PLGN-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] G - 98
1dfo_A_981dfo   A     PLGN-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] S - 99
1dfo_A_981dfo   A     PLGN-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] Q - 100
1dfo_A_981dfo   A     PLGN-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE] N - 102
1g60_A_1991g60   A     SAMS-ADENOSYLMETHIONINE I - 202
1g60_A_1991g60   A     SAMS-ADENOSYLMETHIONINE D - 218
1gc0_A_891gc0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) G - 89
1gc0_A_891gc0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) M - 90
1gc0_A_891gc0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) G - 91
1gu7_A_2771gu7   A     GOLGLYCEROL R - 285
1gu7_A_2771gu7   A     GOLGLYCEROL K - 286
1gu7_A_2771gu7   A     GOLGLYCEROL L - 287
1gu7_A_2771gu7   A     GOLGLYCEROL N - 288
1gu7_A_2771gu7   A     GOLGLYCEROL N - 289
1gu7_A_2771gu7   A     GOLGLYCEROL N - 290
1iay_A_1261iay   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 126
1iay_A_1261iay   A     PLPPYRIDOXAL-5'-PHOSPHATE A - 127
1iay_A_1261iay   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 128
1iay_A_1261iay   A     AVG2-AMINO-4-(2-AMINO-ETHOXY)-BUTYRIC ACID T - 128
1iay_A_1261iay   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 129
1iay_A_1261iay   A     PLPPYRIDOXAL-5'-PHOSPHATE N - 131
1jf9_A_941jf9   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 94
1jf9_A_941jf9   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 95
1jf9_A_941jf9   A     PLPPYRIDOXAL-5'-PHOSPHATE E - 96
1jf9_A_941jf9   A     PLPPYRIDOXAL-5'-PHOSPHATE I - 98
1jgt_A_2191jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER V - 246
1jgt_A_2191jgt   A     APCDIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER V - 247
1m7y_A_1191m7y   A     PPG4-(2-AMINO-ETHOXY)-2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-BUT-3-ENOIC ACID G - 119
1m7y_A_1191m7y   A     PPG4-(2-AMINO-ETHOXY)-2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-BUT-3-ENOIC ACID A - 120
1m7y_A_1191m7y   A     PPG4-(2-AMINO-ETHOXY)-2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-BUT-3-ENOIC ACID T - 121
1m7y_A_1191m7y   A     MPD2-METHYL-2,4-PENTANEDIOL T - 121
1m7y_A_1191m7y   A     PPG4-(2-AMINO-ETHOXY)-2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-BUT-3-ENOIC ACID S - 122
1m7y_A_1191m7y   A     PPG4-(2-AMINO-ETHOXY)-2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-BUT-3-ENOIC ACID N - 124
1n8p_A_791n8p   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 79
1n8p_A_791n8p   A     PLPPYRIDOXAL-5'-PHOSPHATE S - 80
1n8p_A_791n8p   A     PLPPYRIDOXAL-5'-PHOSPHATE A - 81
1o4s_A_971o4s   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 97
1o4s_A_971o4s   A     PLPPYRIDOXAL-5'-PHOSPHATE A - 98
1o4s_A_971o4s   A     PLPPYRIDOXAL-5'-PHOSPHATE K - 99
1o4s_A_971o4s   A     PLPPYRIDOXAL-5'-PHOSPHATE Q - 100
1o4s_A_971o4s   A     PLPPYRIDOXAL-5'-PHOSPHATE L - 102
1poi_A_71poi   A     CUCOPPER (II) ION A - 12
1poi_A_71poi   A     CUCOPPER (II) ION V - 15
1poi_A_71poi   A     CUCOPPER (II) ION H - 16
1poi_A_71poi   A     CUCOPPER (II) ION S - 17
1qmg_A_2021qmg   A     DMV2,3-DIHYDROXY-VALERIANIC ACID D - 202
1qmg_A_2021qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE D - 202
1qmg_A_2021qmg   A     MNMANGANESE (II) ION D - 202
1qmg_A_2021qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE A - 204
1qmg_A_2021qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE Q - 205
1qmg_A_2021qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE N - 208
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gu7_A_2771gu7   A BC3SO4 BINDING SITE FOR CHAIN AR - 285
1gu7_A_2771gu7   A AC6GOL BINDING SITE FOR CHAIN AL - 287
1gu7_A_2771gu7   A AC6GOL BINDING SITE FOR CHAIN AN - 288
1gu7_A_2771gu7   A AC6GOL BINDING SITE FOR CHAIN AN - 289

Clusters included in this Subclass
CLUSTER: HE.4.25
CLUSTER: HE.4.308
CLUSTER: HE.5.10
CLUSTER: HE.6.4