Logo
Information on SUBCLASS 2.6.2
Subclass Accession number: 8262
Subclass: 2.6.2 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 18

Average sequence ID (%) : 17.4 +/- 17.2
Average RMSD (Å) : 0.650 +/- 0.228

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XpGhXh
(φψ)-conformation: aagpbb
Pattern: [adegkqrt]x[almvy]x[adenqrs]x[DG][fgikltv]xxx
Conservation:-0.288-0.5720.130-0.461-0.165-0.3092.738-0.510-0.6830.121-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bbu_A_1771bbu   A195204QFMVNRGFME.HHHHTTT-EE.aaaaaavxbx.
1bjt_*_10441bjt   -10501059QELENLGFPR.HHHHTT--EE.aaaaaavxxx.
1d7k_B_741d7k   B7888KTLAATGTGFDHHHHTTT-EEEaaaaaagxxbx
1e1o_A_1771e1o   A195204QFMVARGFME.HHHHTTT-EE.aaaaaavxbx.
1eok_A_651eok   A7383RSLQSRGIKVLHHHHTTT-EEEaaaaaavxxbb
1f20_A_13321f20   A13371347RALKEQGGHIYHHHHTS--EEEaaaaaalxbbb
1g63_A_1241g63   A131140DLLKNNDVKV.HHHHTTT-EE.aaaaaavxxb.
1g8k_A_4921g8k   A500510YEATQNGGLFVHHHHTTT--EEaaaaaavxbxb
1gte_A_2381gte   A246256ELMKDLGVKIIHHHHTTT-EEEaaaaaavxbbb
1gv4_A_3451gv4   A353363EKVKREGVKVMHHHHTTT-EEEaaaaaavbxxb
1hv9_A_2011hv9   A203213ALAYQEGREIVHHHHTTT--EEaaaaaavxbbb
1jvn_A_661jvn   A7080REYIESGKPIMHHHHHTT--EEaaaaaavxwbb
1kf6_A_2111kf6   A214224GMALSHGVPLRHHHHTTT--EEaaaaaavxxbx
1mpy_A_181mpy   A2434HYVELLGLIEMHHHHTT--EEEaaaaaavxbxa
1nek_A_2211nek   A224234GMAIRAGVPVQHHHHTTT--EEaaaaaagxwbx
1r3e_A_2481r3e   A248258TKMILNGSQIHHHHHTTT--EEaaaaaagxxbb
2fok_A_3412fok   A349359KGLINTGIFIEHHHHTTT--EEaaaaaagxxbx
4eug_A_184eug   A2838ASERQSGVTIYHHHHTTTS-EEaaaaaagbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d7k_B_741d7k   B     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) D - 88
1e1o_A_1771e1o   A     GOLGLYCEROL L - 190
1e1o_A_1771e1o   A     GOLGLYCEROL R - 194
1e1o_A_1771e1o   A     GOLGLYCEROL E - 204
1f20_A_13321f20   A     FMTFORMIC ACID E - 1341
1f20_A_13321f20   A     FMTFORMIC ACID Q - 1342
1f20_A_13321f20   A     FMTFORMIC ACID G - 1343
1f20_A_13321f20   A     FMTFORMIC ACID G - 1344
1f20_A_13321f20   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 1350
1g8k_A_4921g8k   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE I - 513
1g8k_A_4921g8k   A     MGD2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE N - 514
1jvn_A_661jvn   A     143S-2,3-DIHYDRO-5-GLYCIN-2-YL-ISOXAZOL-3-YL-CYSTEINE G - 81
1kf6_A_2111kf6   A     FADFLAVIN-ADENINE DINUCLEOTIDE D - 211
1kf6_A_2111kf6   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 212
1kf6_A_2111kf6   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 215
1nek_A_2211nek   A     FADFLAVIN-ADENINE DINUCLEOTIDE D - 221
1nek_A_2211nek   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 222
1nek_A_2211nek   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 225

Clusters included in this Subclass
CLUSTER: HE.4.72
CLUSTER: HE.5.29
CLUSTER: HE.6.197