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Information on SUBCLASS 1.2.6
Subclass Accession number: 1004
Subclass: 1.2.6 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 52539 (>75 %)  52540 (>75 %)  53747 (>75 %)  53748 (>75 %)  53749 (>75 %)  
Number of loops: 12

Average sequence ID (%) : 17.5 +/- 17.0
Average RMSD (Å) : 0.558 +/- 0.188

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 135-180 rho (°): 225-270
Consensus Sequence: hXGpX
(φψ)-conformation: bbeaa
Pattern: [FILVY][AFGIKLV][ags]x[GS][drsty][egpqs][CGILVY]xxxx[ekst]x[afgil]
Conservation:0.941-0.1360.820-0.6543.131-0.195-0.424-0.524-0.634-0.487-0.530-0.2830.114-0.710-0.429
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1f0x_A_3901f0x   A394408LKMAGDGVGEAKSWLEEE-TTHHHHHHHHHxxbbeaaaaaaaaaa
1g0u_J_1241g0u   J124138YGAHGYSGFYTFSLLEEE-TTHHHHHHHHHbbbbeaaaaaaaaaa
1gpu_A_5571gpu   A559573LVATGSEVSLSVEAAEEE-THHHHHHHHHHbbbbeaaaaaaaaaa
1j5x_A_421j5x   A4559FVGCGSSYNLALTISEEESTHHHHHHHHHHbbbbeaaaaaaaaaa
1kek_A_2711kek   A273287IVSMGSSCETIEEVIEEE-STHHHHHHHHHxbbbeaaaaaaaaaa
1l8a_A_7241l8a   A728742LLGSGSILRHVREAAEEE-GGGHHHHHHHHbbbbeaaaaaaaaaa
1moq_*_2941moq   -297311ILACGTSYNSGMVSREEE-HHHHHHHHHHHbbbbeaaaaaaaaaa
1ni4_B_2071ni4   B209223VVSHSRPVGHCLEAAEEE-STHHHHHHHHHbbbbeaaaaaaaaaa
1nri_A_711nri   A7387YIGAGTSGRLGVLDAEEESHHHHHHHHHHHbbbbeaaaaaaaaaa
1o7q_A_1291o7q   A133147VFAVGRYIEHYLEEFEEE-TTHHHHHHHHHbbbbeaaaaaaaaaa
1ols_B_2221ols   B224238LVAWGTQVHVIREVAEEE-TTHHHHHHHHHbbbbeaaaaaaaaaa
1r1d_A_871r1d   A89103VAGLSLGGVFSLKLGEEE-THHHHHHHHHHbbbbeaaaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1j5x_A_421j5x   A     MSESELENOMETHIONINE C - 48
1j5x_A_421j5x   A     MSESELENOMETHIONINE S - 50
1j5x_A_421j5x   A     MSESELENOMETHIONINE S - 51
1j5x_A_421j5x   A     MSESELENOMETHIONINE L - 54
1j5x_A_421j5x   A     MSESELENOMETHIONINE T - 57
1j5x_A_421j5x   A     MSESELENOMETHIONINE I - 58
1j5x_A_421j5x   A     MSESELENOMETHIONINE Y - 60
1j5x_A_421j5x   A     MSESELENOMETHIONINE Y - 61
1j5x_A_421j5x   A     MSESELENOMETHIONINE F - 62
1j5x_A_421j5x   A     MSESELENOMETHIONINE V - 65
1moq_*_2941moq   *     GLPGLUCOSAMINE 6-PHOSPHATE C - 300
1moq_*_2941moq   *     GLPGLUCOSAMINE 6-PHOSPHATE G - 301
1moq_*_2941moq   *     GLPGLUCOSAMINE 6-PHOSPHATE T - 302
1moq_*_2941moq   *     GLPGLUCOSAMINE 6-PHOSPHATE S - 303
1moq_*_2941moq   *     MPD2-METHYL-2,4-PENTANEDIOL Y - 304
1moq_*_2941moq   *     MPD2-METHYL-2,4-PENTANEDIOL N - 305
1ni4_B_2071ni4   B     MSESELENOMETHIONINE T - 208
1ni4_B_2071ni4   B     MSESELENOMETHIONINE V - 210
1ni4_B_2071ni4   B     MSESELENOMETHIONINE S - 211
1ni4_B_2071ni4   B     MSESELENOMETHIONINE H - 212
1ni4_B_2071ni4   B     MSESELENOMETHIONINE S - 213
1ni4_B_2071ni4   B     MSESELENOMETHIONINE R - 214
1ni4_B_2071ni4   B     MSESELENOMETHIONINE V - 216
1nri_A_711nri   A     MSESELENOMETHIONINE L - 71
1nri_A_711nri   A     MSESELENOMETHIONINE I - 72
1nri_A_711nri   A     MSESELENOMETHIONINE D - 86
1nri_A_711nri   A     MSESELENOMETHIONINE C - 90
1nri_A_711nri   A     MSESELENOMETHIONINE P - 92
1nri_A_711nri   A     MSESELENOMETHIONINE T - 93
1nri_A_711nri   A     MSESELENOMETHIONINE F - 94
1o7q_A_1291o7q   A     UDPURIDINE-5'-DIPHOSPHATE V - 133
1o7q_A_1291o7q   A     UDPURIDINE-5'-DIPHOSPHATE F - 134
1o7q_A_1291o7q   A     UDPURIDINE-5'-DIPHOSPHATE A - 135
1o7q_A_1291o7q   A     UDPURIDINE-5'-DIPHOSPHATE V - 136
1o7q_A_1291o7q   A     UDPURIDINE-5'-DIPHOSPHATE G - 137
1o7q_A_1291o7q   A     UDPURIDINE-5'-DIPHOSPHATE R - 138
1o7q_A_1291o7q   A     MNMANGANESE (II) ION Y - 139
1o7q_A_1291o7q   A     UDPURIDINE-5'-DIPHOSPHATE Y - 139
1o7q_A_1291o7q   A     UDPURIDINE-5'-DIPHOSPHATE I - 140
1o7q_A_1291o7q   A     GOLGLYCEROL E - 141
1o7q_A_1291o7q   A     GOLGLYCEROL H - 142
1o7q_A_1291o7q   A     GOLGLYCEROL Y - 143
1o7q_A_1291o7q   A     UDPURIDINE-5'-DIPHOSPHATE Y - 143
1o7q_A_1291o7q   A     GOLGLYCEROL E - 146
1r1d_A_871r1d   A     MSESELENOMETHIONINE A - 90
1r1d_A_871r1d   A     MSESELENOMETHIONINE G - 91
1r1d_A_871r1d   A     MSESELENOMETHIONINE L - 92
1r1d_A_871r1d   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID L - 92
1r1d_A_871r1d   A     MSESELENOMETHIONINE S - 93
1r1d_A_871r1d   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID S - 93
1r1d_A_871r1d   A     MSESELENOMETHIONINE L - 94
1r1d_A_871r1d   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID L - 94
1r1d_A_871r1d   A     MSESELENOMETHIONINE G - 96
1r1d_A_871r1d   A     MSESELENOMETHIONINE V - 97
1r1d_A_871r1d   A     MSESELENOMETHIONINE L - 100
1r1d_A_871r1d   A     MSESELENOMETHIONINE L - 102
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o7q_A_1291o7q   A AC6UDP BINDING SITE FOR CHAIN AF - 134
1o7q_A_1291o7q   A AC6UDP BINDING SITE FOR CHAIN AA - 135
1o7q_A_1291o7q   A AC6UDP BINDING SITE FOR CHAIN AY - 139
1o7q_A_1291o7q   A AC1GOL BINDING SITE FOR CHAIN AH - 142
1o7q_A_1291o7q   A AC1GOL BINDING SITE FOR CHAIN AY - 143
1o7q_A_1291o7q   A AC1GOL BINDING SITE FOR CHAIN AE - 146

Clusters included in this Subclass
CLUSTER: EH.1.91
CLUSTER: EH.2.68
CLUSTER: EH.3.64
CLUSTER: EH.4.117