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Information on SUBCLASS 5.3.2
Subclass Accession number: 1376
Subclass: 5.3.2 PSSM
Type: EH beta-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
SCOP : 54861 (>75 %)  
 Number of loops: 12

Average sequence ID (%) : 9.7 +/- 13.9
Average RMSD (Å) : 0.742 +/- 0.264

Consensus geometry
d (Å): 15 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315
Consensus Sequence: XXppXhXXX
(φψ)-conformation: bbabpppaa
Pattern: xx[filmptv]x[denpqrst][ehknqsty][aglptv][AFILPY][ACDPST][adegps]xx[efkqr]xx[AGLMVWY]
Conservation:-0.264-0.019-0.062-1.8200.7870.059-0.4771.5292.3620.729-0.441-0.945-0.413-0.562-0.7940.331
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aln_*_1191aln   -121136AITVNYTPCGHCRQFMEEEESS---HHHHHHHbbbbabppxaaaaaaa
1dxy_*_471dxy   -4964NSLQTTPYAAGVFEKMEE--SS-B-HHHHHHHbbbbaxxbxaaaaaaa
1fm0_E_41fm0   E621IVVGPQPFSVGEEYPWEEEESS---HHHHHHHbbbbapxbbaaaaaaa
1gdh_A_1721gdh   A174189DYFDTHRASSSDEASYEEE-SS---HHHHHHHbbbbabxxpaaaaaaa
1gml_A_2891gml   A289304VVITEKGISDLAQHYLEEEESS-B-HHHHHHHbbbbabxbxaaaaaaa
1j8u_A_2411j8u   A242257LRPVAGLLSSRDFLGGEEE--S---HHHHHHHbbwbabxxxaaaaaaa
1q3q_A_2901q3q   A290305VVFVQKGIDDLAQHYLEEEESS-B-HHHHHHHbbbbabxbpaaaaaaa
1s4n_A_1561s4n   A157172VFLNDEPFTEEFKEAVEEEESS---HHHHHHHbbbbabxxxaaaaaaa
1sac_A_1521sac   A157172LYMWDSVLPPENILSAEEEESS---HHHHHHHxbbbabxxxaaaaaaa
1uwv_A_2051uwv   A205219.LRHTAPLSSADREKL.EEESS---HHHHHHH.bxbabpxxaaaaaaa
2nac_A_2162nac   A218233HYTDRHRLPESVEKELEEE-SS---HHHHHHHbbbbabxxwaaaaaaa
2sli_*_2502sli   -255270IKVYSNALSDEELIQAEEEESS---HHHHHHHbbbbaxxxxaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aln_*_1191aln   *     CTD3-DEAZACYTIDINE V - 124
1aln_*_1191aln   *     CTD3-DEAZACYTIDINE Y - 126
1aln_*_1191aln   *     CTD3-DEAZACYTIDINE T - 127
1aln_*_1191aln   *     CTD3-DEAZACYTIDINE P - 128
1aln_*_1191aln   *     ZNZINC ION P - 128
1aln_*_1191aln   *     CTD3-DEAZACYTIDINE C - 129
1aln_*_1191aln   *     ZNZINC ION C - 129
1aln_*_1191aln   *     ZNZINC ION G - 130
1aln_*_1191aln   *     ZNZINC ION H - 131
1aln_*_1191aln   *     CTD3-DEAZACYTIDINE C - 132
1aln_*_1191aln   *     ZNZINC ION C - 132
1aln_*_1191aln   *     ZNZINC ION R - 133
1dxy_*_471dxy   *     COI2-OXO-4-METHYLPENTANOIC ACID L - 51
1dxy_*_471dxy   *     COI2-OXO-4-METHYLPENTANOIC ACID T - 53
1j8u_A_2411j8u   A     THBTETRAHYDROBIOPTERIN V - 245
1j8u_A_2411j8u   A     THBTETRAHYDROBIOPTERIN G - 247
1j8u_A_2411j8u   A     THBTETRAHYDROBIOPTERIN L - 248
1j8u_A_2411j8u   A     THBTETRAHYDROBIOPTERIN L - 249
1j8u_A_2411j8u   A     THBTETRAHYDROBIOPTERIN S - 250
1j8u_A_2411j8u   A     THBTETRAHYDROBIOPTERIN S - 251
1j8u_A_2411j8u   A     THBTETRAHYDROBIOPTERIN F - 254
1j8u_A_2411j8u   A     THBTETRAHYDROBIOPTERIN L - 255
1uwv_A_2051uwv   A     MSESELENOMETHIONINE L - 205
1uwv_A_2051uwv   A     NINICKEL (II) ION R - 206
1uwv_A_2051uwv   A     PO4PHOSPHATE ION R - 206
1uwv_A_2051uwv   A     MSESELENOMETHIONINE D - 215
1uwv_A_2051uwv   A     MSESELENOMETHIONINE L - 219
1uwv_A_2051uwv   A     MSESELENOMETHIONINE F - 222
1uwv_A_2051uwv   A     MSESELENOMETHIONINE S - 223
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1aln_*_1191aln   * ZNZN BINDING SITE.C - 129
1aln_*_1191aln   * ZNZN BINDING SITE.C - 132
1uwv_A_2051uwv   A AC5PO4 BINDING SITE FOR CHAIN AR - 206

Clusters included in this Subclass
CLUSTER: EH.5.28
CLUSTER: EH.6.10