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Information on SUBCLASS 1.1.6
Subclass Accession number: 1597
Subclass: 1.1.6 PSSM
Type: AR beta-beta link
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 3.4.25 (>75 %)  3.4.25.1 (>75 %)  
SCOP : 51160 (>75 %)  56234 (>75 %)  56235 (>75 %)  56251 (>75 %)  
Number of loops: 19

Average sequence ID (%) : 7.9 +/- 14.9
Average RMSD (Å) : 0.632 +/- 0.163

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: XXXXX
(φψ)-conformation: bbabb
Pattern: xxxxxxx
Conservation:-0.541-0.412-0.688-0.4830.994-0.7011.831
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bpy_A_1871bpy   A187193SSGDMDVEESSEEEbxabbbb
1ckq_A_551ckq   A5762YRDSIK.EES-EE.bbabbx.
1fl0_A_2221fl0   A222227LSQAMV.EE--EE.xxabbx.
1gd7_A_771gd7   A7883LSEVLV.EE-SEE.xbabbx.
1i7q_A_3021i7q   A306312ASPESALEES-EEEbbabpab
1jn3_A_1871jn3   A187193SSGDMDVEES-EEEbbabbbb
1jy1_A_5061jy1   A506512KIAWFLVEES-EEEbbabbbb
1k0i_A_701k0i   A7177VHEGVEIEES-EEExbabbbb
1kqf_A_7001kqf   A700706YALEDLYEESS-EEbxabxbb
1ks9_A_1131ks9   A117123TTTHAAREE--EEEbbaxbbb
1mnn_A_2451mnn   A246252IQKVARYEESSEEEbxabxbb
1obo_A_11371obo   A11371143KFVGLALEESSEEEbxabxbb
1qcx_A_411qcx   A4450ILDQTFDEE-SEEEbbabxbx
1qdl_A_2171qdl   A222228SSPELLFEES-EEEbxabxab
1qwy_A_2091qwy   A209215AHYGVDYEE-SEEExbabbbb
1rmg_*_721rmg   -7783QLDGIIYEE-SEEEbxabbbb
1rzt_A_4241rzt   A424430TCGDVDVEES-EEEbbabbbb
1s4n_A_2711s4n   A272278GFTVSIHEES-EEEbbaxbbx
1tyv_*_1661tyv   -168174ECKAKFIEE-SEEEbbabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE S - 187
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE S - 188
1bpy_A_1871bpy   A     MGMAGNESIUM ION S - 188
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE G - 189
1bpy_A_1871bpy   A     MGMAGNESIUM ION G - 189
1bpy_A_1871bpy   A     DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE D - 190
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE D - 190
1bpy_A_1871bpy   A     MGMAGNESIUM ION D - 190
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE M - 191
1bpy_A_1871bpy   A     MGMAGNESIUM ION M - 191
1bpy_A_1871bpy   A     DOC2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE D - 192
1bpy_A_1871bpy   A     DCT2',3'-DIDEOXYCYTIDINE 5'-TRIPHOSPHATE D - 192
1bpy_A_1871bpy   A     MGMAGNESIUM ION D - 192
1i7q_A_3021i7q   A     BEZBENZOIC ACID P - 308
1i7q_A_3021i7q   A     BEZBENZOIC ACID E - 309
1i7q_A_3021i7q   A     PYRPYRUVIC ACID E - 309
1jy1_A_5061jy1   A     MSESELENOMETHIONINE K - 506
1jy1_A_5061jy1   A     MSESELENOMETHIONINE I - 507
1jy1_A_5061jy1   A     MSESELENOMETHIONINE W - 509
1jy1_A_5061jy1   A     MSESELENOMETHIONINE F - 510
1jy1_A_5061jy1   A     MSESELENOMETHIONINE L - 511
1obo_A_11371obo   A     FMNFLAVIN MONONUCLEOTIDE L - 1143
1qwy_A_2091qwy   A     ZNZINC ION H - 210
1qwy_A_2091qwy   A     ZNZINC ION G - 212
1qwy_A_2091qwy   A     ZNZINC ION V - 213
1qwy_A_2091qwy   A     ZNZINC ION D - 214
1rmg_*_721rmg   *     NAGN-ACETYL-D-GLUCOSAMINE Y - 83
1rmg_*_721rmg   *     MANALPHA-D-MANNOSE Y - 83
1rmg_*_721rmg   *     NAGN-ACETYL-D-GLUCOSAMINE R - 84
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1bpy_A_1871bpy   A ACTACTIVE SITE OF NUCLEOTIDYL TRANSFER.D - 190
1bpy_A_1871bpy   A ACTACTIVE SITE OF NUCLEOTIDYL TRANSFER.D - 192
1obo_A_11371obo   A SOASO4 BINDING SITE FOR CHAIN AK - 1137

Clusters included in this Subclass
CLUSTER: AR.1.11
CLUSTER: AR.3.61