ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 3.2.3

Subclass Accession number: 1689
Subclass: 3.2.3

PSSM

Type: AR beta-beta link
DB: ArchDB40

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 11

Average sequence ID (%) : 11.1 +/- 13.1
Average RMSD (Å) : 0.745 +/- 0.211

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	hpXpXXX
(φψ)-conformation:	bbabpbb

Pattern:	x	x	x	[gnst]	[adkqs]	[dhkrs]	x	x	[AFIKLTV]
Conservation:	-0.871	-0.869	0.034	2.206	0.414	-0.029	-0.755	-0.724	0.594

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1cb8_A_635	1cb8	A	636	644	EIETDKPCA	EEEESS-EE	bbbbabxbb
1ewq_A_546	1ewq	A	546	553	.RFGDRLQI	.EESSS-EE	.bbbabxbb
1gui_A_104	1gui	A	110	118	VNLTADWQT	EEE-SS-EE	bxxbabpbb
1h54_A_216	1h54	A	222	230	RLVTDLKNV	EEEESSEEE	bbbbaxxxb
1hnf_*_140	1hnf	-	141	149	LKLSQRVIT	EEEESS-EE	abbbaxxxb
1ig0_A_295	1ig0	A	297	305	FIDTKDDII	EEEESS-EE	bbbbabpbx
1ig3_A_246	1ig3	A	248	256	TVETDHPLL	EEEESS-EE	bbbbabpbx
1n9p_A_261	1n9p	A	261	269	QLFLVSPLT	EEE-SS-EE	xxbxabpbx
1nsz_A_150	1nsz	A	156	164	EAISDKDTV	EEEESS-EE	bbbbabpbb
1rhy_A_108	1rhy	A	114	122	IDISSRPYF	EE-SS--EE	bbxbabxbb
1tul_*_84	1tul	-	86	94	IMFNCAEIK	EEEESS-EE	bbbxabxxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1ewq_A_546	1ewq	A	MSESELENOMETHIONINE	D - 549
1ewq_A_546	1ewq	A	MSESELENOMETHIONINE	R - 550
1ewq_A_546	1ewq	A	MSESELENOMETHIONINE	L - 551
1ewq_A_546	1ewq	A	MSESELENOMETHIONINE	Q - 552
1gui_A_104	1gui	A	GOLGLYCEROL	N - 104
1gui_A_104	1gui	A	BGCBETA-D-GLUCOSE	N - 104
1gui_A_104	1gui	A	GOLGLYCEROL	Y - 105
1gui_A_104	1gui	A	GOLGLYCEROL	F - 106
1gui_A_104	1gui	A	GOLGLYCEROL	A - 107
1gui_A_104	1gui	A	GOLGLYCEROL	Q - 108
1gui_A_104	1gui	A	GOLGLYCEROL	T - 109
1gui_A_104	1gui	A	GOLGLYCEROL	A - 114
1gui_A_104	1gui	A	GOLGLYCEROL	W - 116
1n9p_A_261	1n9p	A	MSESELENOMETHIONINE	L - 264
1n9p_A_261	1n9p	A	MSESELENOMETHIONINE	T - 269
1rhy_A_108	1rhy	A	HGMERCURY (II) ION	F - 122
1rhy_A_108	1rhy	A	EMCETHYL MERCURY ION	F - 122
1rhy_A_108	1rhy	A	HGMERCURY (II) ION	M - 123
1rhy_A_108	1rhy	A	EMCETHYL MERCURY ION	M - 123
1rhy_A_108	1rhy	A	HGMERCURY (II) ION	C - 124
1rhy_A_108	1rhy	A	EMCETHYL MERCURY ION	C - 124
1rhy_A_108	1rhy	A	HGMERCURY (II) ION	H - 125
1rhy_A_108	1rhy	A	EMCETHYL MERCURY ION	H - 125

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gui_A_104	1gui	A	AC6GOL BINDING SITE FOR CHAIN A	N - 104
1gui_A_104	1gui	A	AC6GOL BINDING SITE FOR CHAIN A	Y - 105
1gui_A_104	1gui	A	AC6GOL BINDING SITE FOR CHAIN A	F - 106
1gui_A_104	1gui	A	AC5GOL BINDING SITE FOR CHAIN A	A - 107
1gui_A_104	1gui	A	AC5GOL BINDING SITE FOR CHAIN A	Q - 108
1gui_A_104	1gui	A	AC5GOL BINDING SITE FOR CHAIN A	T - 109
1gui_A_104	1gui	A	AC5GOL BINDING SITE FOR CHAIN A	N - 111
1gui_A_104	1gui	A	AC3GOL BINDING SITE FOR CHAIN A	W - 116

Clusters included in this Subclass

CLUSTER: AR.2.73

CLUSTER: AR.3.124

CLUSTER: AR.3.134

CLUSTER: AR.4.87

CLUSTER: AR.5.183