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PDB code:

Information on SUBCLASS 3.2.1

Subclass Accession number: 193 Subclass: 3.2.1 Type: HE alpha-beta DB: ArchDB40 Image coordinates: Consensus coordinates:

Number of loops: 46 Average sequence ID (%) : 16.2 +/- 17.5 Average RMSD (Å) : 0.604 +/- 0.216 Consensus geometry d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1aw9_*_13	1aw9	-	21	32	VLNEKGLDFEIV	HHHHTT--EEEE	aaaaalxxbbxx
1bia_*_33	1bia	-	42	53	TLRDWGVDVFTV	HHHHTT---EEE	aaaaavxxbxbb
1bou_B_100	1bou	B	109	120	SLILDEFDMTIM	HHHHTT---EEE	aaaaavbxxbxb
1byk_A_192	1byk	A	201	212	FCKAHKLHPVAA	HHHHTT---EEE	aaaaalbxwbbb
1dbx_A_3	1dbx	A	7	18	LLKKQKIPFILH	HHHHHT---EEE	aaaaavxxbbxb
1dcp_A_43	1dcp	A	56	67	QAEKLDHHPEWF	HHHHHT---EEE	aaaaavbbxbbb
1ddz_A_270	1ddz	A	274	285	DAWDAGQELTVQ	HHHHTT---EEE	aaaaavxxbxbb
1ddz_A_524	1ddz	A	528	539	DAWDAGQELEVQ	HHHHTT---EEE	aaaaavxxbbbb
1dug_A_14	1dug	A	19	30	LLEYLEEKYEEH	HHHHHT---EEE	aaaaavxxbbbb
1e6b_A_18	1e6b	A	26	37	ALALKGLDYEYI	HHHHTT---EEE	aaaaavxxbxxb
1f2e_A_12	1f2e	A	17	28	ALRETGADFEAV	HHHHHT---EEE	aaaaavxxbbxb
1g6s_A_199	1g6s	A	207	218	LMKTFGVEIENQ	HHHHTT---EEE	aaaaavbbbbxx
1glq_A_15	1glq	A	20	31	LLADQGQSWKEE	HHHHTT---EEE	aaaaavxbbxbb
1gnw_A_12	1gnw	A	20	31	ALHEKNLDFELV	HHHHTT---EEE	aaaaalbxbbxx
1gwc_A_16	1gwc	A	24	35	ALALKGLSYEDV	HHHHHT---EEE	aaaaavxxbxxb
1h75_A_12	1h75	A	20	31	AMENRGFDFEMI	HHHHTT---EEE	aaaaavxxbbbb
1i52_A_191	1i52	A	194	205	ALEYCGFHPQLV	HHHHTT---EEE	aaaaavxbpxbb
1i6p_A_162	1i6p	A	166	177	SAWKRGQKVTIH	HHHHTT---EEE	aaaaavxxbbbb
1itw_A_521	1itw	A	530	541	ARIREGKDTISV	HHHHTT---EEE	aaaaavbbbxxb
1ixc_A_202	1ixc	A	209	220	LFKHAGIEPRIA	HHHHTT---EEE	aaaaavbxxxba
1iyh_A_16	1iyh	A	21	32	IFAYLDIQYEDH	HHHHTT---EEE	aaaaalbxbxxx
1j09_A_131	1j09	A	136	147	ERARRGEPHVIR	HHHHTT---EEE	aaaaavxxbbbb
1j5y_A_38	1j5y	A	47	58	YLRSLGYNIVAT	HHHHHT---EEE	aaaaagxxxbxb
1j9b_A_14	1j9b	A	21	32	MIRNSGTEPTII	HHHHTT---EEE	aaaaavbxxxbb
1je0_A_132	1je0	A	141	152	SFSKRNLKYYVG	HHHHTT--EEEE	aaaaalbxbbbe
1jjf_A_233	1jjf	A	242	253	YCVANNINHVYW	HHHHTT---EEE	aaaaalbxbbbb
1jlv_A_10	1jlv	A	18	29	TAAAVGVELNLK	HHHHTT---EEE	aaaaavxxbxxb
1k0m_A_25	1k0m	A	33	44	VLWLKGVTFNVT	HHHHHT---EEE	aaaaavxxbbbb
1k3y_A_17	1k3y	A	22	33	LLAAAGVEFEEK	HHHHHT---EEE	aaaaavxxbbbb
1kw3_B_69	1kw3	B	78	88	KLRQAGVAFTR.	HHHHHT---EE.	aaaaavxxbbx.
1l3i_A_146	1l3i	A	146	157	CLRDLGFDVNIT	HHHHTT---EEE	aaaaavxxxbbb
1m0u_A_62	1m0u	A	67	78	LFAYGNQEYEDV	HHHHHT---EEE	aaaaalxxbxxx
1n2a_A_12	1n2a	A	17	28	TLRESGKDFTLV	HHHHTT---EEE	aaaaavxxbbxb
1o4s_A_15	1o4s	A	23	33	ALIKKGEDVIN.	HHHHTT---EE.	aaaaavxxxxx.
1odk_A_131	1odk	A	140	151	RAEALGYPHRVG	HHHHTT--EEEE	aaaaavxwbbbe
1oe8_A_18	1oe8	A	23	34	TLVAAGVNYEDE	HHHHTT---EEE	aaaaavbxbbxb
1okt_A_17	1okt	A	22	33	IFAYLGIEYTDK	HHHHHT---EEE	aaaaavxxbxxx
1oyj_A_16	1oyj	A	24	35	AMAEKGLEFEYR	HHHHHT---EEE	aaaaavxxbxxb
1pmm_A_392	1pmm	A	398	409	RLRLRGWQVPAF	HHHTTT-B--EE	aaaaavxbbwbb
1qhd_A_134	1qhd	A	140	151	NLQNRRQRTGFT	HHHHTT----EE	aaaaalbxbbbx
1rif_A_68	1rif	A	71	81	FCDNFGYKAWI.	HHHHTT--EEE.	aaaaalxbbbb.
1rxy_A_134	1rxy	A	143	154	AAKSIGATTHVG	HHHHTT--EEEE	aaaaavxxbbbe
1v2a_A_10	1v2a	A	18	29	LAKKLGITLNLK	HHHHHT---EEE	aaaaavxbbbpb
1vhw_A_132	1vhw	A	141	152	AAKARGIDVKVG	HHHHTT---EEE	aaaaavbxxbbb
1vk4_A_31	1vk4	A	33	44	TSSLLGVKTKVI	HHHHTT---EEE	aaaaavbpbbbb
2gsq_*_15	2gsq	-	20	31	VLAAHGEEFTDR	HHHHTT---EEE	aaaaavbxbxbx

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1aw9_*_13	1aw9	*	CDCADMIUM ION	G - 26
1aw9_*_13	1aw9	*	CDCADMIUM ION	L - 27
1aw9_*_13	1aw9	*	CDCADMIUM ION	D - 28
1byk_A_192	1byk	A	T6PTREHALOSE-6-PHOSPHATE	R - 194
1dcp_A_43	1dcp	A	HBI7,8-DIHYDROBIOPTERIN	D - 61
1dcp_A_43	1dcp	A	HBI7,8-DIHYDROBIOPTERIN	H - 62
1dcp_A_43	1dcp	A	HBI7,8-DIHYDROBIOPTERIN	H - 63
1dcp_A_43	1dcp	A	HBI7,8-DIHYDROBIOPTERIN	P - 64
1g6s_A_199	1g6s	A	S3PSHIKIMATE-3-PHOSPHATE	Y - 200
1g6s_A_199	1g6s	A	S3PSHIKIMATE-3-PHOSPHATE	I - 203
1g6s_A_199	1g6s	A	S3PSHIKIMATE-3-PHOSPHATE	T - 204
1g6s_A_199	1g6s	A	FMTFORMIC ACID	T - 210
1gnw_A_12	1gnw	A	GTXS-HEXYLGLUTATHIONE	I - 12
1gnw_A_12	1gnw	A	GTXS-HEXYLGLUTATHIONE	A - 13
1gnw_A_12	1gnw	A	GTXS-HEXYLGLUTATHIONE	T - 14
1gnw_A_12	1gnw	A	GTXS-HEXYLGLUTATHIONE	R - 16
1gwc_A_16	1gwc	A	GTXS-HEXYLGLUTATHIONE	P - 16
1gwc_A_16	1gwc	A	GTXS-HEXYLGLUTATHIONE	F - 17
1gwc_A_16	1gwc	A	GTXS-HEXYLGLUTATHIONE	R - 20
1j9b_A_14	1j9b	A	CZZTHIARSAHYDROXY-CYSTEINE	T - 14
1j9b_A_14	1j9b	A	TASTRIHYDROXYARSENITE(III)	T - 14
1j9b_A_14	1j9b	A	CZZTHIARSAHYDROXY-CYSTEINE	S - 15
1j9b_A_14	1j9b	A	TASTRIHYDROXYARSENITE(III)	S - 15
1j9b_A_14	1j9b	A	CZZTHIARSAHYDROXY-CYSTEINE	R - 16
1j9b_A_14	1j9b	A	TASTRIHYDROXYARSENITE(III)	R - 16
1j9b_A_14	1j9b	A	CZZTHIARSAHYDROXY-CYSTEINE	N - 17
1jlv_A_10	1jlv	A	GSHGLUTHATHIONE	A - 10
1jlv_A_10	1jlv	A	GSHGLUTHATHIONE	P - 11
1k3y_A_17	1k3y	A	GOLGLYCEROL	S - 18
1l3i_A_146	1l3i	A	MSESELENOMETHIONINE	C - 146
1l3i_A_146	1l3i	A	MSESELENOMETHIONINE	L - 147
1l3i_A_146	1l3i	A	MSESELENOMETHIONINE	R - 148
1l3i_A_146	1l3i	A	MSESELENOMETHIONINE	D - 149
1l3i_A_146	1l3i	A	MSESELENOMETHIONINE	V - 154
1l3i_A_146	1l3i	A	MSESELENOMETHIONINE	N - 155
1l3i_A_146	1l3i	A	MSESELENOMETHIONINE	I - 156
1l3i_A_146	1l3i	A	MSESELENOMETHIONINE	T - 157
1l3i_A_146	1l3i	A	MSESELENOMETHIONINE	E - 158
1oyj_A_16	1oyj	A	GTTGLUTATHIONE	P - 16
1oyj_A_16	1oyj	A	GTTGLUTATHIONE	F - 17
1oyj_A_16	1oyj	A	GTTGLUTATHIONE	G - 18
1oyj_A_16	1oyj	A	GTTGLUTATHIONE	R - 20
1qhd_A_134	1qhd	A	CACALCIUM ION	E - 134
1qhd_A_134	1qhd	A	CACALCIUM ION	Q - 142
1qhd_A_134	1qhd	A	CACALCIUM ION	T - 148
1qhd_A_134	1qhd	A	CACALCIUM ION	F - 150
1qhd_A_134	1qhd	A	CACALCIUM ION	T - 151
1qhd_A_134	1qhd	A	CACALCIUM ION	F - 152
1qhd_A_134	1qhd	A	ZNZINC ION	H - 153
1qhd_A_134	1qhd	A	CACALCIUM ION	H - 153
1rif_A_68	1rif	A	AUGOLD ION	I - 68
1rif_A_68	1rif	A	AUGOLD ION	K - 69
1rif_A_68	1rif	A	AUGOLD ION	K - 70
1rif_A_68	1rif	A	AUGOLD ION	F - 71
1rif_A_68	1rif	A	AUGOLD ION	C - 72
1rif_A_68	1rif	A	AUGOLD ION	D - 73
1rif_A_68	1rif	A	AUGOLD ION	Y - 77
1rif_A_68	1rif	A	AUGOLD ION	K - 78
1rif_A_68	1rif	A	AUGOLD ION	A - 79
1rif_A_68	1rif	A	AUGOLD ION	I - 81
1rxy_A_134	1rxy	A	GOLGLYCEROL	F - 134
1rxy_A_134	1rxy	A	GOLGLYCEROL	T - 137
1v2a_A_10	1v2a	A	GTSGLUTATHIONE SULFONIC ACID	P - 10
1v2a_A_10	1v2a	A	GTSGLUTATHIONE SULFONIC ACID	P - 11
1v2a_A_10	1v2a	A	GTSGLUTATHIONE SULFONIC ACID	C - 12
1vk4_A_31	1vk4	A	MSESELENOMETHIONINE	A - 31
1vk4_A_31	1vk4	A	MSESELENOMETHIONINE	I - 32
1vk4_A_31	1vk4	A	MSESELENOMETHIONINE	T - 33
1vk4_A_31	1vk4	A	MSESELENOMETHIONINE	S - 34
1vk4_A_31	1vk4	A	MSESELENOMETHIONINE	V - 39
1vk4_A_31	1vk4	A	MSESELENOMETHIONINE	K - 40
1vk4_A_31	1vk4	A	MSESELENOMETHIONINE	T - 41
1vk4_A_31	1vk4	A	MSESELENOMETHIONINE	K - 42

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gwc_A_16	1gwc	A	AC1GTX BINDING SITE FOR CHAIN A	F - 17
1h75_A_12	1h75	A	DISREDOX-ACTIVE DISULFIDE	C - 14
1qhd_A_134	1qhd	A	ZNBTHE ZINC SITS ON A THREE-FOLD AXIS. THE ZINC BINDING SITE FORMED BY THREE SYMMETRICALLY-RELATED PLUS ONE WATER MOLECULE ON THE THREE-FOLD AXIS.	H - 153

Clusters included in this Subclass

CLUSTER: HE.4.143

CLUSTER: HE.4.7

CLUSTER: HE.5.2

CLUSTER: HE.5.26

CLUSTER: HE.6.11

CLUSTER: HE.6.12

CLUSTER: HE.6.133

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