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Information on SUBCLASS 3.2.3
Subclass Accession number: 195
Subclass: 3.2.3 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 16

Average sequence ID (%) : 15.4 +/- 15.8
Average RMSD (Å) : 0.694 +/- 0.264

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXcXXhh
(φψ)-conformation: aalppbb
Pattern: [agilmpt]xx[afgilpvy][aeknqt][AEKNQRS]x[DEGS][aciklv][deknpst][AITV][afgilmpvwy][afiklmv][acgiklmv]
Conservation:-0.462-0.343-0.853-0.593-0.1650.414-0.5142.391-0.3880.1172.040-0.882-0.473-0.290
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a1v_A_2131a1v   A215228PAAYAAQGYKVLVLHHHHHTTT--EEEEaaaaaaavbxbbbx
1brw_A_911brw   A96109GPLVASVGVPVAKMHHHHHTTT--EEEEaaaaaaagxxxbbb
1cbf_*_791cbf   -8699MLDRMREGKMVVRVHHHHHTTT--EEEEaaaaaaavxxbbbb
1cc8_A_531cc8   A5770LEKIKKTGKEVRSGHHHHHTTSS-EEEEaaaaaaavxxxabb
1cli_A_3131cli   A317330LALLNANGENAWKIHHHHHTTT--EEEEaaaaaaavxbbbxa
1cp2_A_141cp2   A2235TSGLHAMGKTIMVVHHHHHTTT--EEEEaaaaaaavxbbbbb
1cr1_A_3181cr1   A327340LQWGTAMGKKVGLAHHHHHTS---EEEEaaaaaaalbxbxbb
1fts_*_3061fts   -314327ARQFEQQGKSVMLAHHHHHTTT--EEEEaaaaaaavbxbbbb
1hjr_A_771hjr   A88101IVAAVNQELPVFEYHHHHHTTT--EEEEaaaaaaavxxxbxb
1ii7_A_581ii7   A6881LQIPKEHSIPVFAIHHHHHTTT--EEEEaaaaaaavxxbbbb
1j8m_F_2551j8m   F259272LSAVAATGATIKFIHHHHHTTT--EEEEaaaaaaavxxxabb
1jje_A_861jje   A8699IEWLNSRSIPTYASHHHHHTTT--EEEEaaaaaaavxxbbbx
1okk_D_1151okk   D123136GRYYQNLGKKVMFCHHHHHTTT--EEEEaaaaaaavxxbbbb
1p99_A_511p99   A5770KELAKKDDIDVEIKHHHHGGGT--EEEEaaaaaaalbbxbxb
1qla_A_151qla   A2134AVATQQKGLSTIVLHHHHHTTT--EEEEaaaaaaavxxbbbx
1uou_A_1251uou   A130143APALAACGCKVPMIHHHHHTTT-BEEEEaaaaaaavxbbwxx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a1v_A_2131a1v   A     CMES,S-(2-HYDROXYETHYL)THIOCYSTEINE L - 226
1brw_A_911brw   A     PO4PHOSPHATE ION T - 91
1brw_A_911brw   A     PO4PHOSPHATE ION T - 92
1brw_A_911brw   A     PO4PHOSPHATE ION K - 108
1brw_A_911brw   A     PO4PHOSPHATE ION M - 109
1brw_A_911brw   A     PO4PHOSPHATE ION S - 110
1cbf_*_791cbf   *     PO4PHOSPHATE ION G - 93
1cbf_*_791cbf   *     PO4PHOSPHATE ION R - 98
1cbf_*_791cbf   *     PO4PHOSPHATE ION V - 99
1cbf_*_791cbf   *     PO4PHOSPHATE ION H - 100
1cc8_A_531cc8   A     HGMERCURY (II) ION K - 65
1cr1_A_3181cr1   A     TTPTHYMIDINE-5'-TRIPHOSPHATE K - 318
1cr1_A_3181cr1   A     TTPTHYMIDINE-5'-TRIPHOSPHATE S - 319
1cr1_A_3181cr1   A     TTPTHYMIDINE-5'-TRIPHOSPHATE T - 320
1cr1_A_3181cr1   A     TTPTHYMIDINE-5'-TRIPHOSPHATE F - 321
1okk_D_1151okk   D     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER K - 115
1okk_D_1151okk   D     MO3MAGNESIUM ION, 3 WATERS COORDINATED K - 115
1okk_D_1151okk   D     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER T - 116
1okk_D_1151okk   D     MO3MAGNESIUM ION, 3 WATERS COORDINATED T - 116
1okk_D_1151okk   D     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER T - 117
1okk_D_1151okk   D     MO3MAGNESIUM ION, 3 WATERS COORDINATED T - 117
1okk_D_1151okk   D     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER T - 118
1okk_D_1151okk   D     GCPPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER K - 121
1qla_A_151qla   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 15
1qla_A_151qla   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 16
1qla_A_151qla   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 17
1qla_A_151qla   A     FADFLAVIN-ADENINE DINUCLEOTIDE L - 34
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1cbf_*_791cbf   * P-4PRECORRIN-4 BINDING SITE IN DEEP TROUGH. ALSO, LOCATION OF BOUND PHOSPHATE RESIDUE 401. PHOSPHATE PRESENT FROM CRYSTALLIZATION CONDITIONS.L - 79
1cbf_*_791cbf   * P-4PRECORRIN-4 BINDING SITE IN DEEP TROUGH. ALSO, LOCATION OF BOUND PHOSPHATE RESIDUE 401. PHOSPHATE PRESENT FROM CRYSTALLIZATION CONDITIONS.R - 98

Clusters included in this Subclass
CLUSTER: HE.6.5