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Information on SUBCLASS 1.2.3
Subclass Accession number: 2081
Subclass: 1.2.3 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 32

Average sequence ID (%) : 11.0 +/- 13.9
Average RMSD (Å) : 0.478 +/- 0.179

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 45-90
Consensus Sequence: XXpXX
(φψ)-conformation: aabaa
Pattern: xxxx[cdhknqst][ekprst]xxx
Conservation:-0.973-0.254-0.451-0.2021.0422.195-0.775-0.479-0.104
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8i_*_3891a8i   -392400LETLLPRHLHHHH-HHHHaaaabaaaa
1ac5_*_4501ac5   -450458VPFDKSLVSHHHH-HHHHaaaabaaaa
1aqu_A_1931aqu   A195203DMKEDIRREHHHH-HHHHaaaabaaaa
1brt_*_1421brt   -151159AVKADRYAFHHHH-HHHHaaaabaaaa
1e0b_A_3031e0b   A306314TNKKCPQKMHHHHSHHHHaaaabaaaa
1e1o_A_1641e1o   A164172VRYRQRYLDHHHHTHHHHaaaabaaaa
1e85_A_711e85   A7179EIWSDAASFHHHHTHHHHaaaabaaaa
1fmj_A_2481fmj   A250258DYLKDLPGCHHHH-HHHHaaaabaaaa
1fs7_A_761fs7   A7684MLKEKPALVHHHH-THHHaaaabaaaa
1ft5_A_91ft5   A1119CSSCHKAQAHHHH-HHHHaaaabaaaa
1i1n_A_1121i1n   A122130VRKDDPTLLHHHH-THHHaaaabaaaa
1i5z_A_991i5z   A105113LIQVNPDILHHHH-THHHaaaabwaaa
1i8o_A_601i8o   A6573PYLADPNAFHHHH-HHHHaaaabaaaa
1j99_A_1841j99   A186194ELKQDTGRTHHHH-HHHHaaaabaaaa
1jb0_A_2411jb0   A241249EFILNPSLMHHHH-HHHHaaaabaaaa
1jr7_A_541jr7   A5664ALEYKSFLRHHHH-THHHaaaabaaaa
1m2k_A_501m2k   A5260AFAKDPEKVHHHH-HHHHaaaabaaaa
1n5u_A_1201n5u   A126134AFHDNEETFHHHH-HHHHaaaabaaaa
1n5u_A_3151n5u   A318326NYAEAKDVFHHHHSHHHHaaaabaaaa
1n69_A_21n69   A1725AVRTNSTFVHHHH-TTHHaaaabaaaa
1n97_A_61n97   A1523DLQQDPLAVHHHH-HHHHaaaabaaaa
1nzo_A_1621nzo   A172180LIRDVPNEYHHHH-HHHHaaaabaaaa
1pqm_A_1381pqm   A138146WYNQTPNRAHHHHHSHHHaaaabaaaa
1q44_A_2281q44   A230238ELKKQTEVEHHHHTHHHHaaaabaaaa
1q8i_A_3161q8i   A320328RFAEDKPALHHHH-HHHHaaaabaaaa
1qb2_A_3931qb2   A395403VFSKQPGRIHHHHSTHHHaaaabaaaa
1rjd_A_351rjd   A5260LKKFSRRAFHHHH-HHHHaaaabaaaa
1thf_D_1041thf   D105113AAVENPSLIHHHH-THHHaaaabaaaa
1uek_A_2031uek   A206214AFRLFPELKHHHH-THHHaaaabaaaa
1uyr_A_14901uyr   A14901498KEWLQPKRYHHHHSHHHHaaaabaaaa
1vj5_A_5251vj5   A525533TQMDKPTEVHHHHSHHHHaaaabaaaa
2ahj_A_672ahj   A7280LLLTDGTAAHHHH-HHHHaaaabaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ac5_*_4501ac5   *     NAGN-ACETYL-D-GLUCOSAMINE K - 454
1aqu_A_1931aqu   A     A3PADENOSINE-3'-5'-DIPHOSPHATE Y - 193
1aqu_A_1931aqu   A     A3PADENOSINE-3'-5'-DIPHOSPHATE K - 197
1e85_A_711e85   A     HECHEME C I - 72
1e85_A_711e85   A     HECHEME C F - 79
1e85_A_711e85   A     HECHEME C K - 82
1e85_A_711e85   A     HECHEME C Q - 83
1e85_A_711e85   A     HECHEME C F - 86
1e85_A_711e85   A     HECHEME C I - 90
1fmj_A_2481fmj   A     A3PADENOSINE-3'-5'-DIPHOSPHATE Y - 248
1fmj_A_2481fmj   A     HGMERCURY (II) ION D - 250
1fmj_A_2481fmj   A     HGMERCURY (II) ION Y - 251
1fmj_A_2481fmj   A     A3PADENOSINE-3'-5'-DIPHOSPHATE L - 252
1fmj_A_2481fmj   A     HGMERCURY (II) ION K - 253
1fmj_A_2481fmj   A     HGMERCURY (II) ION D - 254
1fmj_A_2481fmj   A     HGMERCURY (II) ION L - 255
1fmj_A_2481fmj   A     HGMERCURY (II) ION P - 256
1fmj_A_2481fmj   A     HGMERCURY (II) ION G - 257
1fmj_A_2481fmj   A     HGMERCURY (II) ION C - 258
1fmj_A_2481fmj   A     HGMERCURY (II) ION I - 259
1fmj_A_2481fmj   A     HGMERCURY (II) ION R - 261
1ft5_A_91ft5   A     IPSINORGANIC PHOSPHATE GROUP K - 9
1ft5_A_91ft5   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 10
1ft5_A_91ft5   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 11
1ft5_A_91ft5   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 12
1ft5_A_91ft5   A     IPSINORGANIC PHOSPHATE GROUP S - 12
1ft5_A_91ft5   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 13
1ft5_A_91ft5   A     HEMPROTOPORPHYRIN IX CONTAINING FE C - 14
1ft5_A_91ft5   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 15
1ft5_A_91ft5   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 18
1ft5_A_91ft5   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 19
1ft5_A_91ft5   A     IPSINORGANIC PHOSPHATE GROUP A - 19
1ft5_A_91ft5   A     IPSINORGANIC PHOSPHATE GROUP Q - 20
1ft5_A_91ft5   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 22
1ft5_A_91ft5   A     IPSINORGANIC PHOSPHATE GROUP W - 22
1i1n_A_1121i1n   A     SAHS-ADENOSYL-L-HOMOCYSTEINE L - 114
1i5z_A_991i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE Y - 99
1i5z_A_991i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL V - 108
1i5z_A_991i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL N - 109
1i5z_A_991i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE R - 123
1i5z_A_991i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE L - 124
1i5z_A_991i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE Q - 125
1i5z_A_991i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL V - 126
1i5z_A_991i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE T - 127
1i5z_A_991i5z   A     CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE S - 128
1i5z_A_991i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL E - 129
1i5z_A_991i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL K - 130
1i5z_A_991i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL V - 131
1i5z_A_991i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL N - 133
1i5z_A_991i5z   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL L - 134
1i8o_A_601i8o   A     HECHEME C I - 63
1i8o_A_601i8o   A     HECHEME C Y - 66
1i8o_A_601i8o   A     NH3AMMONIA Y - 66
1i8o_A_601i8o   A     HECHEME C L - 67
1i8o_A_601i8o   A     NH3AMMONIA L - 67
1i8o_A_601i8o   A     SULSULFATE ANION D - 69
1i8o_A_601i8o   A     SULSULFATE ANION P - 70
1i8o_A_601i8o   A     NH3AMMONIA P - 70
1i8o_A_601i8o   A     SULSULFATE ANION N - 71
1i8o_A_601i8o   A     SULSULFATE ANION A - 72
1j99_A_1841j99   A     HGIMERCURY (II) IODIDE E - 196
1j99_A_1841j99   A     HGIMERCURY (II) IODIDE C - 199
1j99_A_1841j99   A     HGIMERCURY (II) IODIDE Q - 200
1jb0_A_2411jb0   A     CL1ALPHA CHLOROPHYLL A E - 241
1jb0_A_2411jb0   A     CL1ALPHA CHLOROPHYLL A F - 242
1jb0_A_2411jb0   A     CACALCIUM ION I - 243
1jb0_A_2411jb0   A     CL1ALPHA CHLOROPHYLL A I - 243
1jb0_A_2411jb0   A     CACALCIUM ION L - 244
1jb0_A_2411jb0   A     CL1ALPHA CHLOROPHYLL A L - 244
1jb0_A_2411jb0   A     CL1ALPHA CHLOROPHYLL A P - 246
1jb0_A_2411jb0   A     CL1ALPHA CHLOROPHYLL A M - 249
1n5u_A_1201n5u   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 123
1n5u_A_1201n5u   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 134
1n5u_A_1201n5u   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 135
1n5u_A_1201n5u   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 136
1n5u_A_1201n5u   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 138
1n5u_A_1201n5u   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 139
1n5u_A_1201n5u   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 140
1n5u_A_1201n5u   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 142
1n5u_A_3151n5u   A     MYRMYRISTIC ACID D - 324
1n5u_A_3151n5u   A     MYRMYRISTIC ACID V - 325
1n5u_A_3151n5u   A     MYRMYRISTIC ACID L - 327
1n5u_A_3151n5u   A     MYRMYRISTIC ACID G - 328
1n5u_A_3151n5u   A     MYRMYRISTIC ACID M - 329
1n5u_A_3151n5u   A     MYRMYRISTIC ACID L - 331
1n69_A_21n69   A     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE V - 32
1n69_A_21n69   A     PEHDI-STEAROYL-3-SN-PHOSPHATIDYLETHANOLAMINE E - 35
1n97_A_61n97   A     EGLETHYLENE GLYCOL L - 13
1n97_A_61n97   A     EGLETHYLENE GLYCOL Q - 17
1thf_D_1041thf   D     PO4PHOSPHATE ION T - 104
1thf_D_1041thf   D     PO4PHOSPHATE ION A - 105

Clusters included in this Subclass
CLUSTER: HH.1.22
CLUSTER: HH.2.15