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Information on SUBCLASS 1.3.4
Subclass Accession number: 2124
Subclass: 1.3.4 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB

Conserved Annotation
EC : 1 (>75 %)  
GO : GO:0005515 (>75 %)  
SCOP : 48370 (>75 %)  48371 (>75 %)  48372 (>75 %)  
Number of loops: 18

Average sequence ID (%) : 8.4 +/- 11.2
Average RMSD (Å) : 0.450 +/- 0.182

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 45-90 rho (°): 180-225
Consensus Sequence: XXXhX
(φψ)-conformation: aalaa
Pattern: xx[afilpwy]xxx[degknqr][acfgilvwy]x[cdeknqsty]x
Conservation:0.6340.4270.4340.0470.141-0.7830.215-1.111-0.6542.152-1.501
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1d3y_A_1991d3y   A203213ARLNAERFWDKHHHHHTTHHHHaaaaaalaaaa
1dpe_*_1131dpe   -113123EYFEGMGLPELHHHHHTTHHHHaaaaaavaaaa
1ee4_A_4181ee4   A422432RYLVSQGCIKPHHHHHTT-HHHaaaaaavaaaa
1f0j_A_1911f0j   A198208AIFQERDLLKTHHHHHTTHHHHaaaaaalaaaa
1f9a_A_1451f9a   A149159DVIKEIKGVERHHHHHHTHHHHaaaaaalaaaa
1fp2_A_271fp2   A3444KWAVEMNIPNIHHHHHTTHHHHaaaaaavaaaa
1gso_A_731gso   A7383EAPLVKGVVDTHHHHHTTHHHHaaaaaavaaaa
1jmx_A_4231jmx   A423433ERAVEDEDVKFHHHHHTTHHHHaaaaaalaaaa
1k2x_B_2331k2x   B234244EVFIRALAAYDHHHHHTTHHHHaaaaaalaaaa
1kiy_A_1771kiy   A181191LRRMNGLGHCVHHHHHH-HHHHaaaaaavaaaa
1l3a_A_2241l3a   A237247VMPYLLGWHTAHHHHHTTHHHHaaaaaavaaaa
1m6y_A_2051m6y   A211221IRIYVNRELENHHHHHHTHHHHaaaaaalaaaa
1mum_A_2701mum   A272282ELYESINYYQYHHHHHTTTHHHaaaaaalaaaa
1nrj_A_961nrj   A111121KLWNSLHLSESHHHHHTTHHHHaaaaaalaaaa
1ohw_A_3581ohw   A369379NIIKREDLLSNHHHHHTTHHHHaaaaaalaaaa
1q8i_A_3251q8i   A341351QIFHKTEIMPFHHHHHHTHHHHaaaaaalaaaa
1so2_A_6951so2   A702712TLFQDTGLLEIHHHHHTTHHHHaaaaaavaaaa
3pmg_A_5313pmg   A541551IALKVSQLQERHHHHHHTHHHHaaaaaalaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dpe_*_1131dpe   *     CDCADMIUM ION E - 116
1f0j_A_1911f0j   A     ARSARSENIC T - 193
1f0j_A_1911f0j   A     ARSARSENIC C - 194
1f0j_A_1911f0j   A     ARSARSENIC I - 195
1f0j_A_1911f0j   A     ARSARSENIC Y - 197
1f0j_A_1911f0j   A     ARSARSENIC A - 198
1kiy_A_1771kiy   A     EDO1,2-ETHANEDIOL G - 186
1kiy_A_1771kiy   A     EDO1,2-ETHANEDIOL L - 187
1kiy_A_1771kiy   A     EDO1,2-ETHANEDIOL V - 191
1m6y_A_2051m6y   A     MSESELENOMETHIONINE F - 208
1m6y_A_2051m6y   A     MSESELENOMETHIONINE Q - 209
1m6y_A_2051m6y   A     MSESELENOMETHIONINE I - 211
1m6y_A_2051m6y   A     MSESELENOMETHIONINE R - 212
1m6y_A_2051m6y   A     MSESELENOMETHIONINE V - 215
1m6y_A_2051m6y   A     MSESELENOMETHIONINE N - 216
1m6y_A_2051m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE N - 216
1m6y_A_2051m6y   A     MSESELENOMETHIONINE E - 218
1m6y_A_2051m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE E - 218
1m6y_A_2051m6y   A     MSESELENOMETHIONINE N - 221
1m6y_A_2051m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE N - 221
1m6y_A_2051m6y   A     MSESELENOMETHIONINE L - 222
1m6y_A_2051m6y   A     MSESELENOMETHIONINE F - 225
1m6y_A_2051m6y   A     MSESELENOMETHIONINE L - 226

Clusters included in this Subclass
CLUSTER: HH.1.29
CLUSTER: HH.2.112
CLUSTER: HH.2.55
CLUSTER: HH.3.100