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PDB code:

Information on SUBCLASS 2.6.1

Subclass Accession number: 2846 Subclass: 2.6.1 Type: EH beta-alpha DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 12 Average sequence ID (%) : 10.2 +/- 15.5 Average RMSD (Å) : 0.533 +/- 0.156 Consensus geometry d (Å): 9 delta (°): 0-45 theta (°): 45-90 rho (°): 315-360

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1d2n_A_605	1d2n	A	609	616	VVDDIERL	EE--HHHH	bbxlaaaa
1daa_A_40	1daa	A	40	47	EMFTVNEH	EESSHHHH	bxxlaaaa
1efd_N_58	1efd	N	58	65	GVADTINY	EES-HHHH	bbxlaaaa
1h6f_A_104	1h6f	A	106	113	HLEAKELW	EETTHHHH	bxxlaaaa
1hk8_A_127	1hk8	A	128	135	TFANVDKV	EETTHHHH	bbxlaaaa
1ih7_A_407	1ih7	A	411	418	DLTSLYPS	EESSHHHH	bxxlaaaa
1j3l_A_94	1j3l	A	94	101	AVRDTEEL	EE--HHHH	bbbvaaaa
1jqb_A_1124	1jqb	A	1125	1132	HVNDADMN	EESSHHHH	bbxlaaaa
1jx4_A_3	1jx4	A	7	14	DFDYFYAQ	EETTHHHH	bxxlaaaa
1kol_A_138	1kol	A	140	147	LVPYADFN	EESSHHHH	xbxlaaaa
1lv7_A_249	1lv7	A	252	259	FIDEIDAV	EETTHHHH	bxxlaaaa
1xbr_A_41	1xbr	A	43	50	SLEERDLW	EETTHHHH	bxxlaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1d2n_A_605	1d2n	A	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	D - 611
1d2n_A_605	1d2n	A	MGMAGNESIUM ION	D - 611
1d2n_A_605	1d2n	A	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	D - 612
1d2n_A_605	1d2n	A	MGMAGNESIUM ION	D - 612
1daa_A_40	1daa	A	PLPPYRIDOXAL-5'-PHOSPHATE	H - 47
1daa_A_40	1daa	A	PLPPYRIDOXAL-5'-PHOSPHATE	R - 50
1efd_N_58	1efd	N	GCRGALLICHROME	N - 64
1efd_N_58	1efd	N	GCRGALLICHROME	W - 68
1h6f_A_104	1h6f	A	MO6MAGNESIUM ION, 6 WATERS COORDINATED	H - 106
1h6f_A_104	1h6f	A	MO6MAGNESIUM ION, 6 WATERS COORDINATED	L - 107
1h6f_A_104	1h6f	A	MO6MAGNESIUM ION, 6 WATERS COORDINATED	E - 108
1h6f_A_104	1h6f	A	MO6MAGNESIUM ION, 6 WATERS COORDINATED	A - 109
1h6f_A_104	1h6f	A	MO6MAGNESIUM ION, 6 WATERS COORDINATED	K - 110
1h6f_A_104	1h6f	A	MO6MAGNESIUM ION, 6 WATERS COORDINATED	E - 111
1hk8_A_127	1hk8	A	DGT2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE	K - 146
1jx4_A_3	1jx4	A	MSESELENOMETHIONINE	V - 3
1jx4_A_3	1jx4	A	CACALCIUM ION	V - 3
1jx4_A_3	1jx4	A	CACALCIUM ION	D - 7
1jx4_A_3	1jx4	A	ADI2',3'-DIDEOXYADENOSINE-5'-DIPHOSPHATE	D - 7
1jx4_A_3	1jx4	A	MSESELENOMETHIONINE	F - 8
1jx4_A_3	1jx4	A	CACALCIUM ION	F - 8
1jx4_A_3	1jx4	A	ADI2',3'-DIDEOXYADENOSINE-5'-DIPHOSPHATE	F - 8
1jx4_A_3	1jx4	A	CACALCIUM ION	D - 9
1jx4_A_3	1jx4	A	ADI2',3'-DIDEOXYADENOSINE-5'-DIPHOSPHATE	D - 9
1jx4_A_3	1jx4	A	CACALCIUM ION	Y - 10
1jx4_A_3	1jx4	A	ADI2',3'-DIDEOXYADENOSINE-5'-DIPHOSPHATE	Y - 10
1jx4_A_3	1jx4	A	CACALCIUM ION	F - 11
1jx4_A_3	1jx4	A	ADI2',3'-DIDEOXYADENOSINE-5'-DIPHOSPHATE	F - 11
1jx4_A_3	1jx4	A	MSESELENOMETHIONINE	Y - 12
1jx4_A_3	1jx4	A	CACALCIUM ION	Y - 12
1jx4_A_3	1jx4	A	ADI2',3'-DIDEOXYADENOSINE-5'-DIPHOSPHATE	Y - 12
1jx4_A_3	1jx4	A	MSESELENOMETHIONINE	E - 16
1jx4_A_3	1jx4	A	CACALCIUM ION	E - 16

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1h6f_A_104	1h6f	A	MO6MO6 BINDING SITE FOR CHAIN A	E - 111
1hk8_A_127	1hk8	A	DG1DGT BINDING SITE FOR CHAIN A	K - 146

Clusters included in this Subclass

CLUSTER: EH.2.83

CLUSTER: EH.3.91

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