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Information on SUBCLASS 3.1.1
Subclass Accession number: 2873
Subclass: 3.1.1 PSSM
Type: EH beta-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 31

Average sequence ID (%) : 13.5 +/- 16.7
Average RMSD (Å) : 0.800 +/- 0.200

Consensus geometry
d (Å): 13 delta (°): 0-45 theta (°): 45-90 rho (°): 225-270
Consensus Sequence: XhXhpXX
(φψ)-conformation: bbpppaa
Pattern: xx[afgilpv]x[aglmpvwy][adegknrst][dehkprst][adegknst][dehkqsy][afiltv]
Conservation:-0.730-1.536-0.310-0.924-0.7901.4760.6390.2690.7841.122
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bxs_A_471bxs   A5059EVEEGDKEDVEEE---HHHHbbpxxbaaaa
1c5c_L_1141c5c   L116125FIFPPSDEQLEEE---HHHHbbbxpxaaaa
1cbf_*_1231cbf   -126135IVPGVTSVFAEE----HHHHxbwbxxaaaa
1dzf_A_601dzf   A6069FQANPTEESIEEE-B-HHHHbbbbxxaaaa
1ejd_A_131ejd   A1625VTISGAKNAAEE--B-HHHHbbxxxxaaaa
1ejd_A_2241ejd   A226235YRVLPDRIETEE--B-HHHHbbxxxxaaaa
1eke_A_611eke   A6372EKRILEAEEIEEE---HHHHbbbbbxaaaa
1euh_A_301euh   A3342SVPAMSTEEVEEE---HHHHbbxbpxaaaa
1fm0_E_1331fm0   E135144RWVEARESDQEE----HHHHbxxxxbaaaa
1fp5_A_3371fp5   A339348YLSRPSPFDLEEE---HHHHbbbxxxaaaa
1g6s_A_2361g6s   A237246YLVEGDASSAEE--B-HHHHbxxxxxaaaa
1gt1_A_1121gt1   A120129VKLNVEDEDLEE----HHHHbxxxbxaaaa
1iic_A_1111iic   A111120FRFNYTKEFFEEE---HHHHbbxbxbaaaa
1iyk_A_1151iyk   A115124FRFKYSHEFFEEE---HHHHbbpbxxaaaa
1jhd_A_3561jhd   A356364.FVLLSGTKV.EE---HHHH.bbbbxaaaa
1kvk_A_1741kvk   A174182.IGSWPEEDL.EE---HHHH.bbbxxaaaa
1ky8_A_441ky8   A4756KVISPSREEVEEE---HHHHbbxxxxaaaa
1l6x_A_2391l6x   A241250FLFPPKPKDTEEE---HHHHbbbwwxaaaa
1lp9_F_1261lp9   F128137SLFEPSKAEIEEE---HHHHbbxxxxaaaa
1lt8_A_1171lt8   A120129GGVSQTPSYLEEE---HHHHxbbbxbaaaa
1mju_L_1141mju   L116125SIFPPSSEQLEEE---HHHHbbbxpxaaaa
1npp_A_1681npp   A168177KPVPLKEEEVEE--B-HHHHbpxxxxaaaa
1nth_A_821nth   A8291RIVKYTEDEIEEE---HHHHbbxbbbaaaa
1o04_A_461o04   A5059QVAEGDKEDVEEE-B-HHHHxbpxxbaaaa
1o6u_A_3751o6u   A382391EVLLPDKASEEEE---HHHHbxxxxxaaaa
1o9j_A_471o9j   A5059EVEEADKEDVEEE---HHHHbbxxxbaaaa
1oga_E_1241oga   E126135AVFEPSEAEIEEE---HHHHbbbxpxaaaa
1qjw_A_971qjw   A97105.TPWANAYYA.EE---HHHH.bpxxxaaaa
1qvb_A_1061qvb   A107116VHVDVDDKAVEEE---HHHHabbxbxaaaa
1wej_H_1241wej   H126135YPLAPGTAALEEE---HHHHbxbbxxaaaa
1xim_A_2121xim   A212221FGINPETGHEEEE--BHHHHbbbbxbaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cbf_*_1231cbf   *     SAHS-ADENOSYL-L-HOMOCYSTEINE V - 130
1cbf_*_1231cbf   *     SAHS-ADENOSYL-L-HOMOCYSTEINE T - 131
1cbf_*_1231cbf   *     SAHS-ADENOSYL-L-HOMOCYSTEINE S - 132
1cbf_*_1231cbf   *     SAHS-ADENOSYL-L-HOMOCYSTEINE V - 133
1cbf_*_1231cbf   *     SAHS-ADENOSYL-L-HOMOCYSTEINE A - 135
1cbf_*_1231cbf   *     SAHS-ADENOSYL-L-HOMOCYSTEINE A - 136
1ejd_A_131ejd   A     HAICYCLOHEXYLAMMONIUM ION E - 15
1ejd_A_2241ejd   A     PO4PHOSPHATE ION R - 232
1ejd_A_2241ejd   A     PO4PHOSPHATE ION I - 233
1eke_A_611eke   A     MSESELENOMETHIONINE R - 65
1eke_A_611eke   A     MSESELENOMETHIONINE I - 66
1eke_A_611eke   A     MSESELENOMETHIONINE L - 67
1eke_A_611eke   A     MSESELENOMETHIONINE E - 68
1eke_A_611eke   A     MSESELENOMETHIONINE A - 69
1eke_A_611eke   A     MSESELENOMETHIONINE E - 71
1eke_A_611eke   A     MSESELENOMETHIONINE I - 72
1eke_A_611eke   A     MSESELENOMETHIONINE N - 73
1eke_A_611eke   A     MSESELENOMETHIONINE Q - 74
1g6s_A_2361g6s   A     FMTFORMIC ACID T - 236
1g6s_A_2361g6s   A     FMTFORMIC ACID Y - 237
1g6s_A_2361g6s   A     FMTFORMIC ACID L - 238
1g6s_A_2361g6s   A     FMTFORMIC ACID V - 239
1gt1_A_1121gt1   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE L - 115
1gt1_A_1121gt1   A     ANCANTHRACEN-1-YLAMINE L - 115
1gt1_A_1121gt1   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE T - 116
1gt1_A_1121gt1   A     ANCANTHRACEN-1-YLAMINE T - 116
1gt1_A_1121gt1   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE E - 117
1gt1_A_1121gt1   A     ANCANTHRACEN-1-YLAMINE E - 117
1gt1_A_1121gt1   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE L - 118
1gt1_A_1121gt1   A     ANCANTHRACEN-1-YLAMINE L - 118
1gt1_A_1121gt1   A     PRZ2-ISOBUTYL-3-METHOXYPYRAZINE F - 119
1gt1_A_1121gt1   A     ANCANTHRACEN-1-YLAMINE F - 119
1iyk_A_1151iyk   A     MIM[CYCLOHEXYLETHYL]-[[[[4-[2-METHYL-1-IMIDAZOLYL-BUTYL] PHENYL]ACETYL]-SERYL]-LYSINYL]-AMINE F - 115
1iyk_A_1151iyk   A     MIM[CYCLOHEXYLETHYL]-[[[[4-[2-METHYL-1-IMIDAZOLYL-BUTYL] PHENYL]ACETYL]-SERYL]-LYSINYL]-AMINE F - 117
1iyk_A_1151iyk   A     MIM[CYCLOHEXYLETHYL]-[[[[4-[2-METHYL-1-IMIDAZOLYL-BUTYL] PHENYL]ACETYL]-SERYL]-LYSINYL]-AMINE Y - 119
1kvk_A_1741kvk   A     MGMAGNESIUM ION E - 193
1kvk_A_1741kvk   A     ATPADENOSINE-5'-TRIPHOSPHATE E - 193
1kvk_A_1741kvk   A     ATPADENOSINE-5'-TRIPHOSPHATE I - 196
1kvk_A_1741kvk   A     MGMAGNESIUM ION H - 197
1kvk_A_1741kvk   A     ATPADENOSINE-5'-TRIPHOSPHATE H - 197
1l6x_A_2391l6x   A     NAGN-ACETYL-D-GLUCOSAMINE S - 239
1l6x_A_2391l6x   A     NAGN-ACETYL-D-GLUCOSAMINE V - 240
1l6x_A_2391l6x   A     NAGN-ACETYL-D-GLUCOSAMINE F - 241
1l6x_A_2391l6x   A     MANALPHA-D-MANNOSE F - 241
1l6x_A_2391l6x   A     NAGN-ACETYL-D-GLUCOSAMINE F - 243
1l6x_A_2391l6x   A     MANALPHA-D-MANNOSE F - 243
1l6x_A_2391l6x   A     GALD-GALACTOSE F - 243
1l6x_A_2391l6x   A     NAGN-ACETYL-D-GLUCOSAMINE P - 244
1l6x_A_2391l6x   A     GALD-GALACTOSE P - 244
1l6x_A_2391l6x   A     GALD-GALACTOSE P - 245
1l6x_A_2391l6x   A     NAGN-ACETYL-D-GLUCOSAMINE K - 246
1l6x_A_2391l6x   A     GALD-GALACTOSE K - 246
1l6x_A_2391l6x   A     GALD-GALACTOSE D - 249
1o04_A_461o04   A     EDO1,2-ETHANEDIOL E - 46
1o04_A_461o04   A     EDO1,2-ETHANEDIOL V - 47
1o04_A_461o04   A     EDO1,2-ETHANEDIOL I - 48
1o04_A_461o04   A     GAIGUANIDINE R - 67
1o6u_A_3751o6u   A     MSESELENOMETHIONINE K - 376
1o6u_A_3751o6u   A     MSESELENOMETHIONINE V - 377
1o6u_A_3751o6u   A     MSESELENOMETHIONINE N - 378
1o6u_A_3751o6u   A     MSESELENOMETHIONINE F - 379
1o6u_A_3751o6u   A     MSESELENOMETHIONINE A - 389
1o6u_A_3751o6u   A     MSESELENOMETHIONINE S - 390
1o6u_A_3751o6u   A     MSESELENOMETHIONINE E - 391
1o6u_A_3751o6u   A     MSESELENOMETHIONINE E - 392
1qjw_A_971qjw   A     MANALPHA-D-MANNOSE T - 97
1qjw_A_971qjw   A     MANALPHA-D-MANNOSE P - 98
1qjw_A_971qjw   A     MANALPHA-D-MANNOSE A - 102
1qjw_A_971qjw   A     MANALPHA-D-MANNOSE Y - 103
1qjw_A_971qjw   A     GOLGLYCEROL Y - 103
1qjw_A_971qjw   A     MANALPHA-D-MANNOSE Y - 104
1qjw_A_971qjw   A     MANALPHA-D-MANNOSE A - 105
1qjw_A_971qjw   A     MANALPHA-D-MANNOSE S - 106
1qjw_A_971qjw   A     MANALPHA-D-MANNOSE E - 107
1qjw_A_971qjw   A     GOLGLYCEROL E - 107
1qjw_A_971qjw   A     MANALPHA-D-MANNOSE V - 108
1qjw_A_971qjw   A     MANALPHA-D-MANNOSE S - 109
1qjw_A_971qjw   A     MANALPHA-D-MANNOSE S - 110
1qjw_A_971qjw   A     MANALPHA-D-MANNOSE L - 111
1xim_A_2121xim   A     COCOBALT (II) ION N - 215
1xim_A_2121xim   A     XYLD-XYLITOL N - 215
1xim_A_2121xim   A     COCOBALT (II) ION E - 217
1xim_A_2121xim   A     XYLD-XYLITOL E - 217
1xim_A_2121xim   A     COCOBALT (II) ION H - 220
1xim_A_2121xim   A     XYLD-XYLITOL H - 220
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gt1_A_1121gt1   A PRZPRZ BINDING SITE FOR CHAIN AT - 116
1gt1_A_1121gt1   A PRZPRZ BINDING SITE FOR CHAIN AE - 117

Clusters included in this Subclass
CLUSTER: EH.2.242
CLUSTER: EH.2.60
CLUSTER: EH.2.98
CLUSTER: EH.3.173
CLUSTER: EH.3.53
CLUSTER: EH.4.32
CLUSTER: EH.4.370
CLUSTER: EH.5.107