ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 1.1.11

Subclass Accession number: 4358
Subclass: 1.1.11

Type: HH alpha-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 13

Average sequence ID (%) : 8.7 +/- 14.6
Average RMSD (Å) : 0.585 +/- 0.163

Consensus geometry

d (Å): 9

delta (°): 0-45

theta (°): 90-135

rho (°): 180-225

Consensus Sequence:	XppXX
(φψ)-conformation:	aapaa

Pattern:	x	x	x	[aflmvw]	x	[cdkqrs]	[dhnqry]	[ekpqr]	[dehnpqst]	x	x
Conservation:	-1.692	-0.043	-0.420	0.524	0.629	1.288	1.338	0.576	0.019	-1.272	-0.945

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a3a_A_111	1a3a	A	118	128	LTNALDDESVI	HHHHT-SHHHH	aaaaaaxaaaa
1auv_A_216	1auv	A	218	228	SVYNFCDKPWV	HHHHTTSHHHH	aaaaaabaaaa
1byu_A_23	1byu	A	24	34	TTFVKRHLTGE	HHHHTTBHHHH	aaaaaaxaaaa
1f7u_A_418	1f7u	A	430	440	HEVMKKNENKY	HHHHHT-HHHH	aaaaaaxaaaa
1i7n_A_217	1i7n	A	219	229	SIYNFCDKPWV	HHHHTSSHHHH	aaaaaabaaaa
1iap_A_49	1iap	A	49	59	LEQVKRRPAHL	HHHHTT-HHHH	aaaaaabaaaa
1kdg_A_483	1kdg	A	486	496	IQTVQSNPTAA	HHHHHTSHHHH	aaaaaaxaaaa
1l0l_B_134	1l0l	B	148	158	KAVALQNPQAH	HHHHTTSHHHH	aaaaaabaaaa
1onq_A_139	1onq	A	145	155	CKVLNQNQHEN	HHHHTT-HHHH	aaaaaabaaaa
1ro7_A_106	1ro7	A	106	116	YDFFKQLKDFN	HHHHTTSHHHH	aaaaaaxaaaa
1s29_A_24	1s29	A	24	34	DVNVQRDIFLK	HHHHTT-HHHH	aaaaaaxaaaa
1uan_A_163	1uan	A	167	177	EAAVLAYRSQF	HHHHHT-HHHH	aaaaaaxaaaa
3fru_A_134	3fru	A	140	150	GNLWMKQPEAA	HHHHTSSHHHH	aaaaaabaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1auv_A_216	1auv	A	MSESELENOMETHIONINE	D - 224
1auv_A_216	1auv	A	MSESELENOMETHIONINE	W - 227
1auv_A_216	1auv	A	MSESELENOMETHIONINE	V - 228
1auv_A_216	1auv	A	MSESELENOMETHIONINE	F - 229
1auv_A_216	1auv	A	MSESELENOMETHIONINE	A - 230
1byu_A_23	1byu	A	MGMAGNESIUM ION	K - 23
1byu_A_23	1byu	A	GDPGUANOSINE-5'-DIPHOSPHATE	K - 23
1byu_A_23	1byu	A	MGMAGNESIUM ION	T - 24
1byu_A_23	1byu	A	GDPGUANOSINE-5'-DIPHOSPHATE	T - 24
1byu_A_23	1byu	A	GDPGUANOSINE-5'-DIPHOSPHATE	T - 25
1byu_A_23	1byu	A	GDPGUANOSINE-5'-DIPHOSPHATE	F - 26
1onq_A_139	1onq	A	SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE	F - 144
1onq_A_139	1onq	A	SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE	V - 147
1onq_A_139	1onq	A	SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE	L - 148
1onq_A_139	1onq	A	SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE	N - 151
1onq_A_139	1onq	A	SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE	E - 154
1onq_A_139	1onq	A	SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE	N - 155
1onq_A_139	1onq	A	SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE	I - 157
1onq_A_139	1onq	A	SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE	T - 158
1onq_A_139	1onq	A	SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE	L - 161
1onq_A_139	1onq	A	SLFSULFATE-3-D-GALACTOSYL-BETA-1-1-N-STEAROYL-D-SPHINGOSINE	L - 162
1ro7_A_106	1ro7	A	MSESELENOMETHIONINE	F - 108
1s29_A_24	1s29	A	MSESELENOMETHIONINE	V - 27
1s29_A_24	1s29	A	MSESELENOMETHIONINE	F - 32
1s29_A_24	1s29	A	MSESELENOMETHIONINE	L - 33
1s29_A_24	1s29	A	MSESELENOMETHIONINE	K - 34
1s29_A_24	1s29	A	MSESELENOMETHIONINE	G - 35

Clusters included in this Subclass